Variant report

Variant	nsv437747
Chromosome Location	chr12:40880060-40884666
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:40882994..40885029-chr12:40904694..40907438,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40879237-40885130	NONHSAT027728

Extended variants
information (count: 402 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:402 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2638868	chr12:40880060-40880061	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs79838518	chr12:40880076-40880077	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs2638869	chr12:40880081-40880082	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs77590081	chr12:40880093-40880094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs116421685	chr12:40880098-40880099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs74726051	chr12:40880116-40880117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs563175126	chr12:40880119-40880120	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs79314009	chr12:40880128-40880129	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs377247637	chr12:40880133-40880134	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs75833061	chr12:40880137-40880138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs575141749	chr12:40880143-40880144	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs12820027	chr12:40880146-40880147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs12825859	chr12:40880149-40880150	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs542552030	chr12:40880153-40880154	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs56308411	chr12:40880158-40880159	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs34406013	chr12:40880167-40880168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs12820756	chr12:40880175-40880176	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs12818645	chr12:40880184-40880185	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs78910429	chr12:40880186-40880187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs560636090	chr12:40880200-40880201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs12818802	chr12:40880207-40880208	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs12826045	chr12:40880228-40880229	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs11830031	chr12:40880246-40880247	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs527905558	chr12:40880254-40880255	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs546657443	chr12:40880256-40880257	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs140788746	chr12:40880290-40880291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs76624891	chr12:40880308-40880309	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs78968767	chr12:40880309-40880310	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs112097568	chr12:40880316-40880317	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs568520879	chr12:40880389-40880390	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs370171939	chr12:40880427-40880428	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs374475412	chr12:40880440-40880441	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs377712357	chr12:40880446-40880447	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs371181116	chr12:40880452-40880453	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs376190866	chr12:40880455-40880456	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs112864659	chr12:40880465-40880466	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs374053736	chr12:40880476-40880477	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs201910735	chr12:40880507-40880508	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs559001136	chr12:40880517-40880518	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs370502411	chr12:40880542-40880543	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs199768257	chr12:40880545-40880546	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs2933361	chr12:40880558-40880559	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs577314767	chr12:40880563-40880564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs386762381	chr12:40880566-40880567	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs35526384	chr12:40880582-40880583	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs71459044	chr12:40880586-40880587	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs375286832	chr12:40880587-40880588	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs61916079	chr12:40880590-40880591	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs61916080	chr12:40880594-40880595	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs560653942	chr12:40880617-40880618	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Autism	20858243	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Cancer	20164920	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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