Variant report

Variant	nsv437961
Chromosome Location	chr6:27675290-27676794
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27676712..27678626-chr6:27679096..27681049,2	K562	blood:
2	chr6:27676729..27679149-chr6:27683111..27685492,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2AI-3	chr6:27674418-27676935	ENSG00000246046
2	lnc-HIST1H2AI-3	chr6:27674418-27676936	NONHSAT108398
3	lnc-HIST1H2AI-3	chr6:27674418-27676935	XLOC_005219
4	lnc-HIST1H2BL-2	chr6:27674985-27675450	NONHSAT108399

No data

Variant related genes	Relation type
TOP1	miRNA target sites

Extended variants
information (count: 54 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1139226	chr6:27675290-27675291	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs184368326	chr6:27675321-27675322	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs550927077	chr6:27675370-27675371	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs147973056	chr6:27675404-27675405	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs530554849	chr6:27675406-27675407	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs370966288	chr6:27675414-27675415	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs199711457	chr6:27675439-27675440	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs550398188	chr6:27675440-27675441	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs12179134	chr6:27675469-27675470	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs536410259	chr6:27675493-27675494	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs553205852	chr6:27675494-27675495	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs552940445	chr6:27675496-27675497	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs566746691	chr6:27675497-27675498	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs79646036	chr6:27675513-27675514	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs538951767	chr6:27675545-27675546	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs12182580	chr6:27675640-27675641	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs190628537	chr6:27675644-27675645	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs141582912	chr6:27675683-27675684	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs150899812	chr6:27675684-27675685	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs557165762	chr6:27675755-27675756	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs573807794	chr6:27675768-27675769	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs138287961	chr6:27675838-27675839	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs559535379	chr6:27675860-27675861	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs75451045	chr6:27675870-27675871	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs9767465	chr6:27675910-27675911	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs377138388	chr6:27675911-27675912	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs182054802	chr6:27675914-27675915	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs186032962	chr6:27675952-27675953	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs376534141	chr6:27675984-27675985	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs530412926	chr6:27676010-27676011	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs77513356	chr6:27676011-27676012	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs567201344	chr6:27676071-27676072	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs367924385	chr6:27676086-27676087	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs546143574	chr6:27676097-27676098	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs147283092	chr6:27676132-27676133	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs115867692	chr6:27676139-27676140	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs561768449	chr6:27676193-27676194	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs569174137	chr6:27676204-27676205	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs190525861	chr6:27676205-27676206	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs369796608	chr6:27676216-27676217	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs557329203	chr6:27676221-27676222	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs573769292	chr6:27676226-27676227	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs373815963	chr6:27676276-27676277	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs9468195	chr6:27676309-27676310	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs140825325	chr6:27676353-27676354	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs545622089	chr6:27676378-27676379	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs113957352	chr6:27676434-27676435	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs565396258	chr6:27676455-27676456	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs575896293	chr6:27676490-27676491	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs541158519	chr6:27676552-27676553	Weak transcription Enhancers Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	19571809	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27662400-27678000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:27662400-27680000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:27662400-27680400	Weak transcription	Spleen	Spleen
4	chr6:27662400-27680600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:27662400-27684600	Weak transcription	Lung	lung
6	chr6:27662400-27685600	Weak transcription	Esophagus	oesophagus
7	chr6:27662600-27678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:27662600-27678600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:27662600-27680600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:27662600-27680800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:27662600-27684000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:27662800-27678400	Weak transcription	Fetal Lung	lung
13	chr6:27662800-27678400	Weak transcription	Thymus	Thymus
14	chr6:27662800-27678600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:27662800-27684000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:27662800-27684800	Weak transcription	Fetal Kidney	kidney
17	chr6:27662800-27688400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:27662800-27688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:27662800-27689000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:27663000-27688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:27663200-27676400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:27663200-27678200	Weak transcription	Brain Germinal Matrix	brain
23	chr6:27663200-27678200	Weak transcription	Fetal Brain Female	brain
24	chr6:27663200-27680800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:27663200-27682400	Weak transcription	Pancreas	Pancrea
26	chr6:27663200-27683800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:27663200-27688400	Weak transcription	HMEC	breast
28	chr6:27663400-27678400	Weak transcription	Fetal Brain Male	brain
29	chr6:27663400-27678400	Weak transcription	K562	blood
30	chr6:27663400-27687800	Weak transcription	NHEK	skin
31	chr6:27664600-27684600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:27668200-27684400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:27668800-27680400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:27669600-27675600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:27669600-27677000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:27669800-27684400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr6:27670000-27677200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:27671400-27687200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:27671600-27688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:27671800-27678200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:27671800-27680400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:27671800-27680400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:27671800-27681400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:27672000-27678000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:27672000-27678200	Weak transcription	HepG2	liver
46	chr6:27672000-27678400	Weak transcription	Ovary	ovary
47	chr6:27672000-27680000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:27672000-27680600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:27672200-27678000	Weak transcription	Primary T cells from cord blood	blood
50	chr6:27672200-27678600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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