Variant report

Variant	nsv438257
Chromosome Location	chr13:98177939-98178925
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2769285	chr13:98177939-98177940	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs181865194	chr13:98177990-98177991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550898885	chr13:98178002-98178003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567612852	chr13:98178042-98178043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536157432	chr13:98178088-98178089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs546832195	chr13:98178102-98178103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530676536	chr13:98178103-98178104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553169744	chr13:98178126-98178127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566527773	chr13:98178157-98178158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs370918559	chr13:98178171-98178172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs538750819	chr13:98178190-98178191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2769284	chr13:98178199-98178200	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs575206273	chr13:98178276-98178277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186425459	chr13:98178301-98178302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs77848491	chr13:98178373-98178374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74106249	chr13:98178393-98178394	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs542888872	chr13:98178420-98178421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190932185	chr13:98178455-98178456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528643112	chr13:98178478-98178479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs545491657	chr13:98178496-98178497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570513794	chr13:98178512-98178513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565186227	chr13:98178513-98178514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531024232	chr13:98178529-98178530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138868495	chr13:98178573-98178574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568957299	chr13:98178655-98178656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs530044124	chr13:98178661-98178662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183241914	chr13:98178662-98178663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs557192928	chr13:98178665-98178666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs142607598	chr13:98178669-98178670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs566677751	chr13:98178703-98178704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538417508	chr13:98178704-98178705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs552344418	chr13:98178790-98178791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs568650743	chr13:98178862-98178863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs537529581	chr13:98178863-98178864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs554169551	chr13:98178886-98178887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs538482941	chr13:98178895-98178896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2769283	chr13:98178925-98178926	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	22032731	CNVD
Rhabdomyosarcoma	17210683	CNVD
Wilms tumour	21544195	CNVD
Developmental delay	21147756	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	19651601	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Burkitt''s lymphoma	20823134	CNVD
Breast cancer	21785460	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98175600-98179000	Weak transcription	HepG2	liver

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