Variant report

Variant	nsv442044
Chromosome Location	chr7:50995074-50999772
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 184 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:184 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565032613	chr7:50995076-50995077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs540525350	chr7:50995078-50995079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541572372	chr7:50995079-50995080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs985339	chr7:50995107-50995108	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs985340	chr7:50995176-50995177	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs376350144	chr7:50995227-50995228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184746907	chr7:50995306-50995307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543054030	chr7:50995311-50995312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs563306903	chr7:50995316-50995317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12673066	chr7:50995337-50995338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532122890	chr7:50995346-50995347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs552348172	chr7:50995372-50995373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565772988	chr7:50995396-50995397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530627968	chr7:50995435-50995436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs561232445	chr7:50995457-50995458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543835859	chr7:50995463-50995464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371623445	chr7:50995547-50995548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9642409	chr7:50995578-50995579	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs568287867	chr7:50995606-50995607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs146455072	chr7:50995616-50995617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs9642603	chr7:50995621-50995622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143180808	chr7:50995653-50995654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532850252	chr7:50995706-50995707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs141872943	chr7:50995715-50995716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs139955423	chr7:50995716-50995717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs186732429	chr7:50995765-50995766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558634670	chr7:50995769-50995770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs191109173	chr7:50995788-50995789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572159181	chr7:50995805-50995806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541286795	chr7:50995827-50995828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184751742	chr7:50995847-50995848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540163706	chr7:50995853-50995854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs574918980	chr7:50995973-50995974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370465621	chr7:50995987-50995988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544122711	chr7:50996004-50996005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145441050	chr7:50996009-50996010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs73344435	chr7:50996027-50996028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs7794123	chr7:50996074-50996075	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs545777063	chr7:50996165-50996166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564327843	chr7:50996191-50996192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150575537	chr7:50996232-50996233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200792294	chr7:50996233-50996234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs528692732	chr7:50996252-50996253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559495468	chr7:50996274-50996275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs60430962	chr7:50996289-50996290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs73344437	chr7:50996323-50996324	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs548100846	chr7:50996331-50996332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568283125	chr7:50996334-50996335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368054053	chr7:50996339-50996340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs377045361	chr7:50996350-50996351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Biliary cancer	19435499	CNVD
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	22495311	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastric cancer	24379144	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Non-small cell lung cancer	17643093	CNVD
Ovarian cancer	18182111	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17369134	CNVD
Barrett''s esophagus	18559552	CNVD
head and neck squamous cell carcinoma	16943533	CNVD
Anaplastic thyroid cancer	17079354	CNVD
Basal-like breast cancer	17875215	CNVD
Colorectal cancer	16882699	CNVD
Colorectal cancer	18794099	CNVD
Gastrointestinal stromal cancer	17643098	CNVD
Lung cancer	18381415	CNVD
Metastatic colorectal cancer	17664472	CNVD
Non-small cell lung cancer	19255323	CNVD
Non-small cell lung cancer	17673923	CNVD
Non-small cell lung cancer	17975165	CNVD
Non-small cell lung cancer	19622585	CNVD
Ovarian cancer	16607561	CNVD
Squamous cell cancer	19670535	CNVD
head and neck squamous cell carcinoma	16818711	CNVD
small cell lung cancer	18829487	CNVD
Breast cancer	17661082	CNVD
Adenocarcinoma	19260752	CNVD
Esophageal cancer	16575012	CNVD
Lung adenocarcinoma	19138956	CNVD
Lung adenocarcinoma	18379350	CNVD
Lung adenocarcinoma	18258923	CNVD
Lung cancer	19138956	CNVD
Lung cancer	18379350	CNVD
Lung cancer	18258923	CNVD
Non-small cell lung cancer	18304967	CNVD
Non-small cell lung cancer	19451690	CNVD
Non-small cell lung cancer	19260752	CNVD
Non-small cell lung cancer	17079354	CNVD
Non-small cell lung cancer	18559607	CNVD
Rectal cancer	19506820	CNVD
Triple-negative breast cancer	18950515	CNVD
head and neck squamous cell carcinoma	18813952	CNVD
Non-small cell lung cancer	17504988	CNVD
Non-small cell lung cancer	16943533	CNVD
Non-small cell lung cancer	18509184	CNVD
head and neck squamous cell carcinoma	17538160	CNVD
Colorectal cancer	19712476	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Lung cancer	19671679	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
small cell lung cancer	20016488	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Pancreatic cancer	17952125	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Barrett''s adenocarcinoma	18663352	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50984600-50998200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:50996600-50997000	Enhancers	Pancreas	Pancrea
3	chr7:50997000-51008600	Weak transcription	Pancreas	Pancrea

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