Variant report
| Variant | nsv442140 |
|---|---|
| Chromosome Location | chr9:26713320-26718477 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C9orf82-1 | chr9:26716406-26716605 | XLOC_007661 |
| No data |
| No data |
| No data |
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs567821150 | chr9:26713332-26713333 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs10757623 | chr9:26713335-26713336 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs540255215 | chr9:26713350-26713351 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs115813109 | chr9:26713372-26713373 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs539414783 | chr9:26713373-26713374 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs547335722 | chr9:26713374-26713375 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs573509154 | chr9:26713397-26713398 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs368423203 | chr9:26713434-26713435 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs555008557 | chr9:26713522-26713523 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs183031758 | chr9:26713534-26713535 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs529879465 | chr9:26713555-26713556 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs548311782 | chr9:26713577-26713578 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs375047418 | chr9:26713592-26713593 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs187654806 | chr9:26713616-26713617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs372759868 | chr9:26713656-26713657 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs527750813 | chr9:26713658-26713659 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs192184437 | chr9:26713734-26713735 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs570781411 | chr9:26713736-26713737 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs73642984 | chr9:26713763-26713764 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs139263996 | chr9:26713774-26713775 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs377132105 | chr9:26713823-26713824 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs550445645 | chr9:26713862-26713863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs116465556 | chr9:26713867-26713868 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs567129733 | chr9:26713897-26713898 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs190714519 | chr9:26713905-26713906 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs151028865 | chr9:26713955-26713956 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs533831507 | chr9:26713978-26713979 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs115863536 | chr9:26713983-26713984 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs10967486 | chr9:26714022-26714023 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 30 | rs544211262 | chr9:26714067-26714068 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs141105182 | chr9:26714072-26714073 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs554131326 | chr9:26714077-26714078 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs541641751 | chr9:26714129-26714130 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs559866065 | chr9:26714196-26714197 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs527787116 | chr9:26714201-26714202 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs545881208 | chr9:26714242-26714243 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs564370802 | chr9:26714284-26714285 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 38 | rs113358413 | chr9:26714336-26714337 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs531710550 | chr9:26714355-26714356 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs550240985 | chr9:26714387-26714388 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs13299624 | chr9:26714414-26714415 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 42 | rs1434480 | chr9:26714419-26714420 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 43 | rs548020541 | chr9:26714519-26714520 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 44 | rs566268511 | chr9:26714545-26714546 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 45 | rs73425883 | chr9:26714585-26714586 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 46 | rs565303418 | chr9:26714611-26714612 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 47 | rs62542075 | chr9:26714612-26714613 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 48 | rs2060409 | chr9:26714614-26714615 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 49 | rs537864470 | chr9:26714618-26714619 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 50 | rs555859799 | chr9:26714674-26714675 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:116)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 16608533 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Retinoblastoma | 22278416 | CNVD |
| Splenic marginal zone lymphoma | 18492102 | CNVD |
| Melanoma | 18172304 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myopathy | 18421352 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Acute lymphoblastic leukemia | 18957548 | CNVD |
| Myeloproliferative neoplasm | 17564968 | CNVD |
| Malignant meningioma | 17937814 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
| Cancer | 20164919 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Chronic myeloid leukemia | 21384125 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Esophageal adenocarcinoma | 19417022 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Myelodysplastic syndrome | 21251322 | CNVD |
| Autism | 22495311 | CNVD |
| Hepatocellular carcinoma | 18803288 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Developmental delay | 21147756 | CNVD |
| Pilocytic astrocytoma | 18670637 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Melanoma | 22183965 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Non-small cell lung cancer | 19010865 | CNVD |
| Myoepithelioma | 18604193 | CNVD |
| Acute myeloid leukemia | 19651601 | CNVD |
| Coronary Disease | 20032323 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Cancer | 21732550 | CNVD |
| Gastric cancer | 22539939 | CNVD |
| Cancer | 21183584 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Diffuse large b-cell lymphoma | 18287131 | CNVD |
| Metastatic melanoma | 18483359 | CNVD |
| Non-small cell lung cancer | 20864512 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Glioblastoma | 17090523 | CNVD |
| Lung cancer | 16773561 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Bladder cancer | 19088036 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Melanoma | 16977458 | CNVD |
| Glioblastoma multiforme | 17369134 | CNVD |
| Chagasic megaesophagus | 20163722 | CNVD |
| Melanoma | 19566914 | CNVD |
| Squamous cell cancer | 19047905 | CNVD |
| Lung adenocarcinoma | 19525976 | CNVD |
| Lung cancer | 19525976 | CNVD |
| Malignant mesothelioma | 18160781 | CNVD |
| Pleural malignant mesothelioma | 18160781 | CNVD |
| Hodgkin''s lymphoma | 18179710 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Pancreatic cancer | 21811587 | CNVD |
| Barrett''s syndrome | 19417022 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| polycythaemia | 22829968 | CNVD |
| Neuroblastoma | 21899760 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:26713000-26714800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr9:26715000-26715200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 3 | chr9:26715200-26716400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 4 | chr9:26715200-26720400 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 5 | chr9:26715800-26716400 | Enhancers | HUES6 Cell Line | embryonic stem cell |
