Variant report

Variant	nsv442867
Chromosome Location	chr3:89671681-89674140
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:88 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564414520	chr3:89671682-89671683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs188412632	chr3:89671690-89671691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs549609883	chr3:89671706-89671707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113585903	chr3:89671808-89671809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567803285	chr3:89671809-89671810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535206062	chr3:89671869-89671870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546964359	chr3:89671874-89671875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146313912	chr3:89671881-89671882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192255253	chr3:89671896-89671897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531726655	chr3:89671983-89671984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs139599429	chr3:89672007-89672008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369571555	chr3:89672015-89672016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs71621552	chr3:89672079-89672080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs370717850	chr3:89672130-89672131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571182376	chr3:89672135-89672136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs374770585	chr3:89672155-89672156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184317558	chr3:89672160-89672161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538438688	chr3:89672208-89672209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs73847668	chr3:89672317-89672318	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs571797765	chr3:89672400-89672401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144266018	chr3:89672411-89672412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs554254288	chr3:89672434-89672435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113737427	chr3:89672437-89672438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs546181673	chr3:89672443-89672444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147824420	chr3:89672459-89672460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs371185430	chr3:89672460-89672461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146582584	chr3:89672578-89672579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs531537244	chr3:89672579-89672580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188647902	chr3:89672608-89672609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191609500	chr3:89672634-89672635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561571681	chr3:89672643-89672644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547735287	chr3:89672702-89672703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184399091	chr3:89672706-89672707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs114424087	chr3:89672720-89672721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs533740244	chr3:89672771-89672772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs149075348	chr3:89672772-89672773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551403320	chr3:89672775-89672776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs189354579	chr3:89672776-89672777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555428692	chr3:89672777-89672778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs538573756	chr3:89672786-89672787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs556775104	chr3:89672794-89672795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs114422219	chr3:89672853-89672854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs182150344	chr3:89672859-89672860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537581171	chr3:89672865-89672866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553929933	chr3:89672898-89672899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs572547797	chr3:89672940-89672941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs556320854	chr3:89672964-89672965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368616100	chr3:89672969-89672970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187225370	chr3:89672970-89672971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs72925673	chr3:89672984-89672985	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89665200-89674600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:89673600-89673800	Enhancers	HepG2	liver
3	chr3:89674000-89675000	Weak transcription	HepG2	liver

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