Variant report

Variant	nsv456060
Chromosome Location	chr13:90309159-90392614
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:90347808..90348492-chr13:90905964..90906495,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-26	chr13:90343642-90343795	NONHSAT034635
2	lnc-SLITRK6-26	chr13:90351476-90351493	NONHSAT034635
3	lnc-SLITRK6-26	chr13:90341209-90342696	NONHSAT034635
4	lnc-SLITRK6-26	chr13:90353649-90353765	NONHSAT034635
5	lnc-SLITRK6-26	chr13:90376736-90376852	NONHSAT034635
6	lnc-SLITRK6-26	chr13:90361586-90361709	NONHSAT034635

No data

Extended variants
information (count: 1547 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1547 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187505289	chr13:90312039-90312040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs77759900	chr13:90312043-90312044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs34073053	chr13:90312062-90312063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs191902192	chr13:90312079-90312080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs184199155	chr13:90312082-90312083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs569995119	chr13:90312085-90312086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs574786035	chr13:90312098-90312099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs537030763	chr13:90312217-90312218	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs138525448	chr13:90312224-90312225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs375376690	chr13:90312225-90312226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs548981624	chr13:90312246-90312247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs567221778	chr13:90312275-90312276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs534718742	chr13:90312282-90312283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546248176	chr13:90312293-90312294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188484719	chr13:90312337-90312338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs372410696	chr13:90312368-90312369	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs572591937	chr13:90312369-90312370	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs144372969	chr13:90312389-90312390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs56007802	chr13:90312410-90312411	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs576362063	chr13:90312411-90312412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs543377112	chr13:90312436-90312437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs78785612	chr13:90312443-90312444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs9515590	chr13:90312445-90312446	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs541521708	chr13:90312476-90312477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs559629479	chr13:90312485-90312486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533141336	chr13:90312499-90312500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs146640273	chr13:90312509-90312510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs563542578	chr13:90312516-90312517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs72634208	chr13:90312528-90312529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs192754959	chr13:90312540-90312541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs141386317	chr13:90312541-90312542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs567264138	chr13:90312561-90312562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs534363212	chr13:90312599-90312600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs546673726	chr13:90312606-90312607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs571037147	chr13:90312609-90312610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs548869272	chr13:90312660-90312661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs539629803	chr13:90312721-90312722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs184293373	chr13:90312727-90312728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs111371449	chr13:90312789-90312790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs576300564	chr13:90312800-90312801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs75653854	chr13:90312811-90312812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs9522610	chr13:90312830-90312831	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs77289569	chr13:90312831-90312832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs117845567	chr13:90312962-90312963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs73593510	chr13:90313000-90313001	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs542732516	chr13:90313006-90313007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs545198214	chr13:90313035-90313036	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs559771286	chr13:90313036-90313037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs112340553	chr13:90313158-90313159	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs190755334	chr13:90313164-90313165	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Burkitt''s lymphoma	20823134	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90312000-90313400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:90312800-90313600	Enhancers	HMEC	breast
3	chr13:90313400-90314200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:90314200-90314400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:90316200-90316600	Enhancers	Gastric	stomach
6	chr13:90321200-90321600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:90321200-90321800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:90321600-90323000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:90322600-90323600	Enhancers	HUVEC	blood vessel
10	chr13:90323000-90323400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:90323000-90323400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:90323000-90323600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:90323600-90324800	Weak transcription	HUVEC	blood vessel
14	chr13:90327800-90328000	Enhancers	Gastric	stomach
15	chr13:90327800-90328000	Enhancers	Spleen	Spleen
16	chr13:90328000-90329200	Weak transcription	HUVEC	blood vessel
17	chr13:90329200-90329800	Enhancers	HUVEC	blood vessel
18	chr13:90336400-90336800	Enhancers	Fetal Heart	heart
19	chr13:90336800-90340800	Weak transcription	Fetal Heart	heart
20	chr13:90337000-90337600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:90337200-90337800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr13:90337600-90339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:90339000-90339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:90340000-90340400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:90340000-90341400	Enhancers	Brain Cingulate Gyrus	brain
26	chr13:90340600-90340800	Enhancers	Brain Substantia Nigra	brain
27	chr13:90340800-90341600	Active TSS	Brain Anterior Caudate	brain
28	chr13:90340800-90341600	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr13:90340800-90341600	Enhancers	Fetal Heart	heart
30	chr13:90340800-90342200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr13:90341000-90341200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:90341000-90341400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr13:90341000-90341600	Enhancers	Right Atrium	heart
34	chr13:90341000-90341600	Enhancers	Right Ventricle	heart
35	chr13:90341000-90341800	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr13:90341000-90341800	Enhancers	Colon Smooth Muscle	Colon
37	chr13:90341000-90342400	Enhancers	Brain Angular Gyrus	brain
38	chr13:90341000-90342400	Enhancers	Brain Hippocampus Middle	brain
39	chr13:90341200-90341400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:90341200-90341600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:90341200-90341600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr13:90341200-90341600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr13:90341200-90341600	Enhancers	Adipose Nuclei	Adipose
44	chr13:90341200-90341800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr13:90341200-90342000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:90341400-90341800	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr13:90341400-90341800	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr13:90341600-90341800	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr13:90341600-90342400	Enhancers	Brain Substantia Nigra	brain
50	chr13:90341800-90342400	Enhancers	Brain Cingulate Gyrus	brain

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