Variant report

Variant	nsv458763
Chromosome Location	chr19:53682042-53705554
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr19:53696341-53696692	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:53696179-53696305	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:53700005-53700557	H1-hESC	embryonic stem cell:	n/a	n/a
4	BHLHE40	chr19:53698652-53698829	K562	blood:	n/a	n/a
5	BHLHE40	chr19:53698601-53698837	GM12878	blood:	n/a	n/a
6	BHLHE40	chr19:53696330-53696718	K562	blood:	n/a	n/a
7	BRCA1	chr19:53696315-53697043	H1-hESC	embryonic stem cell:	n/a	n/a
8	CBX3	chr19:53688313-53688728	K562	blood:	n/a	n/a
9	CBX3	chr19:53696473-53696709	K562	blood:	n/a	n/a
10	CCNT2	chr19:53696493-53696794	K562	blood:	n/a	n/a
11	CEBPB	chr19:53696413-53696725	K562	blood:	n/a	n/a
12	CEBPB	chr19:53696599-53696928	K562	blood:	n/a	n/a
13	CEBPB	chr19:53685649-53685941	IMR90	lung:	n/a	n/a
14	CHD1	chr19:53696275-53696352	H1-hESC	embryonic stem cell:	n/a	n/a
15	CHD2	chr19:53696473-53696936	K562	blood:	n/a	n/a
16	CHD2	chr19:53686488-53686939	Hela-S3	cervix:	n/a	n/a
17	CHD2	chr19:53700567-53700576	K562	blood:	n/a	n/a
18	CHD2	chr19:53696117-53696928	H1-hESC	embryonic stem cell:	n/a	n/a
19	CREB1	chr19:53698604-53698892	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr19:53698680-53698830	GM12864	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
21	CTCF	chr19:53698660-53698810	HPAF	blood vessel:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
22	CTCF	chr19:53698576-53699002	HCT-116	colon:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
23	CTCF	chr19:53698616-53698815	MCF-7	breast:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
24	CTCF	chr19:53696580-53696652	Spleen_OC	spleen:	n/a	n/a
25	CTCF	chr19:53693120-53693196	GM19240	blood:	n/a	n/a
26	CTCF	chr19:53693040-53693190	HPAF	blood vessel:	n/a	n/a
27	CTCF	chr19:53698660-53698810	GM12864	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
28	CTCF	chr19:53698640-53698790	HMF	breast:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
29	CTCF	chr19:53698660-53698810	GM12873	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
30	CTCF	chr19:53688540-53688690	HEK293	kidney:	n/a	n/a
31	CTCF	chr19:53688431-53688697	Gliobla	brain:	n/a	n/a
32	CTCF	chr19:53693040-53693190	HCPEpiC	choroid plexus:	n/a	n/a
33	CTCF	chr19:53692998-53693324	K562	blood:	n/a	n/a
34	CTCF	chr19:53698640-53698790	AG04449	skin:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
35	CTCF	chr19:53698260-53698410	NHDF-neo	bronchial:	n/a	n/a
36	CTCF	chr19:53698640-53698790	Caco-2	colon:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
37	CTCF	chr19:53698613-53698871	HepG2	liver:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
38	CTCF	chr19:53688540-53688690	HCPEpiC	choroid plexus:	n/a	n/a
39	CTCF	chr19:53698600-53698750	HVMF	connective:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
40	CTCF	chr19:53698634-53698809	A549	lung:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
41	CTCF	chr19:53698640-53698790	AG10803	skin:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
42	CTCF	chr19:53698621-53698835	GM12891	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
43	CTCF	chr19:53693020-53693170	WERI-Rb-1	eye:	n/a	n/a
44	CTCF	chr19:53698592-53698801	SK-N-SH_RA	brain:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
45	CTCF	chr19:53693640-53693790	HMF	breast:	n/a	n/a
46	CTCF	chr19:53698640-53698790	GM12871	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
47	CTCF	chr19:53698680-53698830	MCF-7	breast:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
48	CTCF	chr19:53698700-53698850	MCF-7	breast:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
49	CTCF	chr19:53698478-53698945	H1-hESC	embryonic stem cell:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
50	CTCF	chr19:53693068-53693179	GM12891	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53696623-53696673	HMEC	breast:	n/a
2	chr19:53697124-53697174	AG09309	skin:	n/a
3	chr19:53685874-53685924	PrEC	prostate:	n/a
4	chr19:53685874-53685924	AG04450	lung:	fetal
5	chr19:53693063-53693113	AG10803	skin:	n/a
6	chr19:53696649-53696699	SKMC	muscle:	n/a
7	chr19:53696642-53696692	BJ	skin:	n/a
8	chr19:53696326-53696376	PFSK-1	brain:	n/a
9	chr19:53696642-53696692	A549	lung:	n/a
10	chr19:53696886-53696936	PANC-1	pancreas:	n/a
11	chr19:53696623-53696673	NHDF-neo	bronchial:	n/a
12	chr19:53697284-53697334	HCF	heart:	n/a
13	chr19:53696649-53696699	HEEpiC	esophagus:	n/a
14	chr19:53696753-53696803	U87	brain:	n/a
15	chr19:53696728-53696778	SAEC	small airway:	n/a
16	chr19:53693063-53693113	NT2-D1	testis:	n/a
17	chr19:53696326-53696376	HIPEpiC	eye:	n/a
18	chr19:53696217-53696267	SKMC	muscle:	n/a
19	chr19:53697124-53697174	HRE	kidney:	n/a
20	chr19:53696649-53696699	ovcar-3	ovarian:	n/a
21	chr19:53696642-53696692	ovcar-3	ovarian:	n/a
22	chr19:53697284-53697334	CMK	blood:	n/a
23	chr19:53695062-53695112	HepG2	liver:	n/a
24	chr19:53696569-53696619	Jurkat	blood:	n/a
25	chr19:53696217-53696267	HCT-116	colon:	n/a
26	chr19:53695062-53695112	IMR90	lung:	fetal
27	chr19:53696326-53696376	HNPCEpiC	eye:	n/a
28	chr19:53693063-53693113	SK-N-MC	brain:	n/a
29	chr19:53695062-53695112	NB4	blood:	n/a
30	chr19:53696649-53696699	SK-N-SH	brain:	n/a
31	chr19:53696649-53696699	HUVEC	blood vessel:	n/a
32	chr19:53696728-53696778	Jurkat	blood:	n/a
33	chr19:53693063-53693113	HAEpiC	amniotic membrane:	n/a
34	chr19:53700527-53700577	BJ	skin:	n/a
35	chr19:53696642-53696692	ECC-1	luminal epithelium:	n/a
36	chr19:53696326-53696376	GM06990	blood:	n/a
37	chr19:53696569-53696619	SK-N-SH_RA	brain:	n/a
38	chr19:53697534-53697584	HNPCEpiC	eye:	n/a
39	chr19:53697284-53697334	HPAEpiC	pulmonary alveolar:	n/a
40	chr19:53696326-53696376	NB4	blood:	n/a
41	chr19:53700527-53700577	HEK293	kidney:	embryo
42	chr19:53700527-53700577	NT2-D1	testis:	n/a
43	chr19:53696649-53696699	HL-60	blood:	n/a
44	chr19:53697534-53697584	AoSMC	blood vessel:	n/a
45	chr19:53685874-53685924	HAEpiC	amniotic membrane:	n/a
46	chr19:53696642-53696692	BE2_C	brain:	n/a
47	chr19:53696326-53696376	RPTEC	kidney:	n/a
48	chr19:53696623-53696673	BE2_C	brain:	n/a
49	chr19:53697284-53697334	RPTEC	kidney:	n/a
50	chr19:53700527-53700577	HCT-116	colon:	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:53698251..53699428-chr19:54295942..54296559,3	MCF-7	breast:
2	chr19:53685672..53687787-chr19:53698865..53701833,2	MCF-7	breast:
3	chr19:53700585..53702772-chr19:53706802..53709941,3	MCF-7	breast:
4	chr19:53695457..53697741-chr19:53699175..53701996,2	K562	blood:
5	chr19:53695457..53697741-chr19:53699175..53701996,2	K562	blood:
6	chr19:53692021..53693951-chr19:53695076..53697230,2	K562	blood:
7	chr19:53462207..53464223-chr19:53697419..53699092,2	MCF-7	breast:
8	chr19:53698678..53699363-chr19:54014997..54015830,3	MCF-7	breast:
9	chr19:53686910..53689224-chr19:53694726..53696698,2	K562	blood:
10	chr19:53705415..53707075-chr19:53718366..53721132,2	MCF-7	breast:
11	chr19:53699014..53701688-chr19:53703459..53706126,2	K562	blood:
12	chr19:53685574..53688103-chr19:53699507..53701678,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF665-1	chr19:53683900-53686196	NONHSAT067645
2	lnc-ZNF665-1	chr19:53696565-53696580	NONHSAT067644
3	lnc-ZNF665-1	chr19:53686137-53686196	NONHSAT067643
4	lnc-ZNF665-1	chr19:53682821-53683237	NONHSAT067643
5	lnc-VN1R2-6	chr19:53703877-53703956	ENSG00000269051.1
6	lnc-ZNF665-1	chr19:53686137-53686196	NONHSAT067644
7	lnc-VN1R2-6	chr19:53700364-53700515	ENSG00000269051.1
8	lnc-ZNF665-1	chr19:53682950-53683237	NONHSAT067644
9	lnc-ZNF665-1	chr19:53693439-53693573	NONHSAT067644
10	lnc-ZNF665-1	chr19:53696565-53696639	NONHSAT067643
11	lnc-ZNF665-1	chr19:53696565-53696619	NONHSAT067645
12	lnc-ZNF665-1	chr19:53694972-53695088	NONHSAT067644

Variant related genes	Relation type
ENSG00000269051	TF binding region
ZNF665	TF binding region
ENSG00000269051	CpG island
ZNF665	CpG island
ENSG00000197497	chromatin interactions
ENSG00000269051	chromatin interactions

Extended variants
information (count: 1013 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:1013 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16984547	chr19:53682042-53682043	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	disease
2	rs370252703	chr19:53682054-53682055	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs559679941	chr19:53682059-53682060	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs533484868	chr19:53682069-53682070	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371308700	chr19:53682101-53682102	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201636178	chr19:53682121-53682122	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569872945	chr19:53682172-53682173	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs113052514	chr19:53682272-53682273	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs112038874	chr19:53682286-53682287	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs530675735	chr19:53682303-53682304	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs530355568	chr19:53682364-53682365	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs372837321	chr19:53682381-53682382	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs373705974	chr19:53682397-53682398	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs567489985	chr19:53682398-53682399	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188897253	chr19:53682409-53682410	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534416651	chr19:53682422-53682423	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs368643503	chr19:53682442-53682443	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs571188953	chr19:53682443-53682444	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs192962118	chr19:53682454-53682455	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs556593391	chr19:53682462-53682463	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554693449	chr19:53682486-53682487	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567949607	chr19:53682488-53682489	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs574994004	chr19:53682493-53682494	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543652109	chr19:53682497-53682498	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555915461	chr19:53682500-53682501	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574283079	chr19:53682501-53682502	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112754466	chr19:53682546-53682547	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548516881	chr19:53682560-53682561	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs13382118	chr19:53682561-53682562	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs533323760	chr19:53682563-53682564	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs549166596	chr19:53682577-53682578	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs545519514	chr19:53682578-53682579	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs563817978	chr19:53682585-53682586	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577167565	chr19:53682594-53682595	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531015893	chr19:53682599-53682600	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534226976	chr19:53682607-53682608	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs548940993	chr19:53682612-53682613	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113245491	chr19:53682617-53682618	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs569059794	chr19:53682626-53682627	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs35184690	chr19:53682631-53682632	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs73059806	chr19:53682702-53682703	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184612079	chr19:53682735-53682736	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs528391568	chr19:53682743-53682744	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546832508	chr19:53682760-53682761	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs189595864	chr19:53682762-53682763	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11670682	chr19:53682765-53682766	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs556532072	chr19:53682768-53682769	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568647118	chr19:53682788-53682789	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs115562815	chr19:53682801-53682802	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs555707016	chr19:53682838-53682839	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	20459607	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1417 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53664800-53695400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:53668800-53683000	Weak transcription	Pancreas	Pancrea
3	chr19:53669400-53685800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:53669400-53695600	Weak transcription	Brain Germinal Matrix	brain
5	chr19:53669600-53682800	Weak transcription	Left Ventricle	heart
6	chr19:53669600-53682800	Weak transcription	Osteobl	bone
7	chr19:53670000-53695400	Weak transcription	Right Ventricle	heart
8	chr19:53670200-53695200	Weak transcription	Fetal Brain Female	brain
9	chr19:53670600-53682800	Weak transcription	Dnd41	blood
10	chr19:53672200-53686400	Weak transcription	Colon Smooth Muscle	Colon
11	chr19:53673600-53688200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:53674000-53682800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr19:53674000-53695400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr19:53674000-53695600	Weak transcription	Brain Angular Gyrus	brain
15	chr19:53674000-53695600	Weak transcription	Brain Anterior Caudate	brain
16	chr19:53674200-53693600	Weak transcription	Brain Hippocampus Middle	brain
17	chr19:53674200-53693600	Weak transcription	Fetal Muscle Leg	muscle
18	chr19:53675200-53682400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr19:53676600-53693600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr19:53677200-53685800	Weak transcription	Fetal Stomach	stomach
21	chr19:53677400-53682800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr19:53677400-53685000	Weak transcription	Placenta	Placenta
23	chr19:53677600-53682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr19:53677600-53682600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr19:53677600-53682800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr19:53677600-53682800	Weak transcription	Adipose Nuclei	Adipose
27	chr19:53677600-53683000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr19:53677600-53686400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:53677600-53695600	Weak transcription	Fetal Lung	lung
30	chr19:53677800-53682600	Weak transcription	Ovary	ovary
31	chr19:53678000-53682600	Weak transcription	Thymus	Thymus
32	chr19:53678800-53695800	Weak transcription	Aorta	Aorta
33	chr19:53679200-53683000	Weak transcription	Primary T cells from cord blood	blood
34	chr19:53679800-53686600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr19:53680000-53682800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr19:53680000-53684800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr19:53680200-53682600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr19:53680200-53695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr19:53680400-53683000	Weak transcription	Spleen	Spleen
40	chr19:53680600-53695600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:53681000-53683400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr19:53681000-53685600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr19:53681000-53695600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr19:53681200-53695400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr19:53681400-53682800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr19:53681400-53682800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr19:53681400-53686000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr19:53681400-53693400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:53681400-53695600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr19:53681600-53682600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links