Variant report

Variant	nsv460746
Chromosome Location	chr3:84779079-84833513
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:83995499..83996096-chr3:84821714..84822693,2	MCF-7	breast:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VGLL3-6	chr3:84795196-84795488	ENSG00000242641.1
2	lnc-VGLL3-9	chr3:84815450-84815519	ucscGeneNc_uc003dqi_2
3	lnc-VGLL3-9	chr3:84827551-84827723	ucscGeneNc_uc003dqi_2
4	lnc-VGLL3-9	chr3:84827999-84828182	ucscGeneNc_uc003dqi_2
5	lnc-VGLL3-9	chr3:84817481-84817621	ucscGeneNc_uc003dqi_2
6	lnc-VGLL3-9	chr3:84803425-84803544	ucscGeneNc_uc003dqi_2
7	lnc-VGLL3-6	chr3:84795196-84795488	NONHSAT090649
8	lnc-VGLL3-9	chr3:84798241-84801697	ucscGeneNc_uc003dqi_2
9	lnc-VGLL3-9	chr3:84827206-84827356	ucscGeneNc_uc003dqi_2
10	lnc-VGLL3-9	chr3:84804462-84804746	ucscGeneNc_uc003dqi_2

No data

Extended variants
information (count: 671 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:671 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193277127	chr3:84786414-84786415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs145835620	chr3:84786432-84786433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs577777453	chr3:84786514-84786515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs575264556	chr3:84786568-84786569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs536266196	chr3:84786640-84786641	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs76180991	chr3:84786654-84786655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573115620	chr3:84786702-84786703	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs138746847	chr3:84786736-84786737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs565079225	chr3:84786744-84786745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs577007869	chr3:84786757-84786758	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs544249686	chr3:84786797-84786798	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs73130872	chr3:84786849-84786850	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs2123827	chr3:84786868-84786869	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs2034718	chr3:84786979-84786980	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs372129814	chr3:84786999-84787000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs560311708	chr3:84787028-84787029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs113029816	chr3:84787099-84787100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570928904	chr3:84787107-84787108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs373762180	chr3:84787133-84787134	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs552637122	chr3:84787155-84787156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs114515119	chr3:84787162-84787163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs538444791	chr3:84787208-84787209	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141076035	chr3:84787238-84787239	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568991920	chr3:84787247-84787248	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536227988	chr3:84787271-84787272	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572055408	chr3:84787300-84787301	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554530009	chr3:84787446-84787447	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566382828	chr3:84787475-84787476	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs538208242	chr3:84787517-84787518	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs534089427	chr3:84787542-84787543	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558575484	chr3:84787604-84787605	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576587591	chr3:84787658-84787659	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9839255	chr3:84787815-84787816	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs189486967	chr3:84787827-84787828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559413572	chr3:84787838-84787839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534438300	chr3:84787870-84787871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs574569057	chr3:84787917-84787918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs541953358	chr3:84787926-84787927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560530112	chr3:84787948-84787949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs527732016	chr3:84787956-84787957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546430823	chr3:84787992-84787993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551467058	chr3:84787996-84787997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192472150	chr3:84788005-84788006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs183761019	chr3:84788033-84788034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550422126	chr3:84788048-84788049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs146941236	chr3:84788109-84788110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs539105853	chr3:84788115-84788116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs533624062	chr3:84788116-84788117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529803046	chr3:84788118-84788119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs548024739	chr3:84788128-84788129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
Medulloblastoma	16783165	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Schizophrenia	23813976	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84786400-84787200	Enhancers	Fetal Brain Female	brain
2	chr3:84786800-84787800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:84787000-84787400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:84787000-84787400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:84787200-84791600	Weak transcription	Fetal Brain Female	brain
6	chr3:84787400-84787800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:84787800-84788600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:84788600-84788800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:84791600-84793200	Enhancers	Fetal Brain Female	brain
10	chr3:84792000-84793200	Enhancers	Fetal Brain Male	brain
11	chr3:84792800-84793200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:84793200-84794600	Weak transcription	Fetal Brain Female	brain
13	chr3:84794800-84795000	Enhancers	Fetal Brain Female	brain
14	chr3:84805200-84805400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:84805400-84806000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:84806000-84806200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:84806200-84806400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:84806400-84806600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:84806400-84808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:84806600-84808400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:84808400-84809200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:84808400-84809400	Enhancers	Pancreas	Pancrea
23	chr3:84808800-84809000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:84809400-84809800	Weak transcription	Pancreas	Pancrea
25	chr3:84809800-84810200	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links