Variant report

Variant	nsv461574
Chromosome Location	chr4:87239764-87279096
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:117)
CpG islands
(count:183)
Chromatin interactive
region (count:7)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:117 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr4:87277672-87277936	GM12878	blood:	n/a	chr4:87277779-87277790
2	BATF	chr4:87277613-87277956	GM12878	blood:	n/a	chr4:87277779-87277790
3	CEBPB	chr4:87260186-87260515	IMR90	lung:	n/a	n/a
4	CEBPB	chr4:87255591-87255814	IMR90	lung:	n/a	n/a
5	CTCF	chr4:87248181-87248262	LNCaP	prostate:	n/a	n/a
6	CTCF	chr4:87260420-87260570	GM12869	blood:	n/a	n/a
7	CTCF	chr4:87255260-87255410	GM12864	blood:	n/a	n/a
8	CTCF	chr4:87278829-87278876	ProgFib	skin:	n/a	n/a
9	CTCF	chr4:87264471-87264488	Lung_OC	lung:	n/a	n/a
10	CTCF	chr4:87252720-87252870	AG04450	lung:	n/a	n/a
11	CTCF	chr4:87254620-87254651	GM20000	blood:	n/a	n/a
12	E2F4	chr4:87260202-87260693	MCF10A-Er-Src	breast:	n/a	n/a
13	EP300	chr4:87260259-87260509	SK-N-SH_RA	brain:	n/a	n/a
14	EP300	chr4:87277656-87277899	GM12878	blood:	n/a	n/a
15	EP300	chr4:87260068-87260763	SK-N-SH	brain:	n/a	chr4:87260567-87260581
16	EP300	chr4:87260181-87260490	SK-N-SH_RA	brain:	n/a	n/a
17	FAM48A	chr4:87270517-87270518	GM12878	blood:	n/a	n/a
18	FOS	chr4:87260109-87260675	HUVEC	blood vessel:	n/a	n/a
19	FOS	chr4:87260201-87260553	MCF10A-Er-Src	breast:	n/a	n/a
20	FOS	chr4:87260192-87260584	MCF10A-Er-Src	breast:	n/a	n/a
21	FOS	chr4:87259898-87259910	MCF10A-Er-Src	breast:	n/a	n/a
22	FOS	chr4:87260188-87260574	MCF10A-Er-Src	breast:	n/a	n/a
23	FOS	chr4:87240716-87240742	MCF10A-Er-Src	breast:	n/a	n/a
24	FOS	chr4:87260192-87260583	MCF10A-Er-Src	breast:	n/a	n/a
25	FOSL1	chr4:87260151-87260621	HCT-116	colon:	n/a	n/a
26	FOSL2	chr4:87260075-87260651	A549	lung:	n/a	n/a
27	FOSL2	chr4:87260120-87260633	SK-N-SH	brain:	n/a	n/a
28	FOSL2	chr4:87260062-87260733	SK-N-SH	brain:	n/a	n/a
29	FOSL2	chr4:87260220-87260517	A549	lung:	n/a	n/a
30	FOXA1	chr4:87263433-87263678	T-47D	breast:	n/a	chr4:87263592-87263607
31	GATA2	chr4:87259873-87260475	HUVEC	blood vessel:	n/a	n/a
32	GATA3	chr4:87259988-87260721	SK-N-SH	brain:	n/a	chr4:87260590-87260603
33	GATA3	chr4:87276111-87276305	SH-SY5Y	brain:	n/a	n/a
34	GATA3	chr4:87260047-87260711	SK-N-SH	brain:	n/a	chr4:87260590-87260603
35	IRF3	chr4:87247431-87247436	GM12878	blood:	n/a	n/a
36	IRF4	chr4:87277577-87277976	GM12878	blood:	n/a	n/a
37	JUN	chr4:87276171-87276228	K562	blood:	n/a	n/a
38	JUN	chr4:87263106-87263130	HepG2	liver:	n/a	n/a
39	JUND	chr4:87260013-87260722	SK-N-SH	brain:	n/a	n/a
40	JUND	chr4:87260056-87260581	SK-N-SH	brain:	n/a	n/a
41	JUND	chr4:87260173-87260560	HCT-116	colon:	n/a	n/a
42	JUND	chr4:87260001-87260709	SK-N-SH	brain:	n/a	n/a
43	MAFF	chr4:87244269-87244567	HepG2	liver:	n/a	chr4:87244393-87244411
44	MAFF	chr4:87277892-87277945	HepG2	liver:	n/a	n/a
45	MAFK	chr4:87259979-87260516	IMR90	lung:	n/a	n/a
46	MAFK	chr4:87270185-87270187	HepG2	liver:	n/a	n/a
47	MAFK	chr4:87277797-87277974	HepG2	liver:	n/a	chr4:87277892-87277907 chr4:87277894-87277903 chr4:87277893-87277903
48	MAFK	chr4:87244280-87244549	HepG2	liver:	n/a	chr4:87244397-87244411 chr4:87244398-87244409
49	MAFK	chr4:87263367-87263666	IMR90	lung:	n/a	chr4:87263524-87263540
50	MAFK	chr4:87244248-87244570	HepG2	liver:	n/a	chr4:87244397-87244411 chr4:87244398-87244409

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:87260624-87260674	HL-60	blood:	n/a
2	chr4:87278335-87278385	T-47D	breast:	n/a
3	chr4:87278335-87278385	HRCEpiC	kidney:	n/a
4	chr4:87269436-87269486	BJ	skin:	n/a
5	chr4:87278335-87278385	AG09319	gingival:	n/a
6	chr4:87278335-87278385	GM06990	blood:	n/a
7	chr4:87269436-87269486	HNPCEpiC	eye:	n/a
8	chr4:87278335-87278385	HL-60	blood:	n/a
9	chr4:87260624-87260674	Jurkat	blood:	n/a
10	chr4:87260624-87260674	CMK	blood:	n/a
11	chr4:87260624-87260674	GM12891	blood:	n/a
12	chr4:87269436-87269486	ECC-1	luminal epithelium:	n/a
13	chr4:87260624-87260674	HEEpiC	esophagus:	n/a
14	chr4:87278335-87278385	HCPEpiC	choroid plexus:	n/a
15	chr4:87269436-87269486	GM12892	blood:	n/a
16	chr4:87260624-87260674	HIPEpiC	eye:	n/a
17	chr4:87260624-87260674	HAEpiC	amniotic membrane:	n/a
18	chr4:87269436-87269486	U87	brain:	n/a
19	chr4:87260624-87260674	HNPCEpiC	eye:	n/a
20	chr4:87278335-87278385	IMR90	lung:	fetal
21	chr4:87278335-87278385	AoSMC	blood vessel:	n/a
22	chr4:87278335-87278385	HUVEC	blood vessel:	n/a
23	chr4:87278335-87278385	SKMC	muscle:	n/a
24	chr4:87278335-87278385	ovcar-3	ovarian:	n/a
25	chr4:87260624-87260674	GM12892	blood:	n/a
26	chr4:87269436-87269486	NT2-D1	testis:	n/a
27	chr4:87260624-87260674	HRE	kidney:	n/a
28	chr4:87278335-87278385	LNCaP	prostate:	n/a
29	chr4:87260624-87260674	AG09319	gingival:	n/a
30	chr4:87269436-87269486	Caco-2	colon:	n/a
31	chr4:87269436-87269486	HAEpiC	amniotic membrane:	n/a
32	chr4:87269436-87269486	SAEC	small airway:	n/a
33	chr4:87278335-87278385	PANC-1	pancreas:	n/a
34	chr4:87278335-87278385	NH-A	brain:	n/a
35	chr4:87260624-87260674	NHBE	bronchial:	n/a
36	chr4:87260624-87260674	HRCEpiC	kidney:	n/a
37	chr4:87269436-87269486	HRCEpiC	kidney:	n/a
38	chr4:87269436-87269486	HIPEpiC	eye:	n/a
39	chr4:87260624-87260674	AoSMC	blood vessel:	n/a
40	chr4:87278335-87278385	Hela-S3	cervix:	n/a
41	chr4:87260624-87260674	HPAEpiC	pulmonary alveolar:	n/a
42	chr4:87269436-87269486	HCM	heart:	n/a
43	chr4:87269436-87269486	NB4	blood:	n/a
44	chr4:87269436-87269486	HL-60	blood:	n/a
45	chr4:87269436-87269486	BE2_C	brain:	n/a
46	chr4:87278335-87278385	RPTEC	kidney:	n/a
47	chr4:87278335-87278385	ECC-1	luminal epithelium:	n/a
48	chr4:87269436-87269486	HEEpiC	esophagus:	n/a
49	chr4:87260624-87260674	H1-hESC	embryonic stem cell:	embryo
50	chr4:87278335-87278385	CMK	blood:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:87253478..87254333-chr4:87266353..87266878,2	K562	blood:
2	chr4:87252863..87254625-chr4:87263758..87265638,2	K562	blood:
3	chr4:87273387..87275250-chr4:87290836..87293550,2	K562	blood:
4	chr4:87252863..87254625-chr4:87263758..87265638,2	K562	blood:
5	chr4:87253478..87254333-chr4:87266353..87266878,2	K562	blood:
6	chr4:87256963..87259889-chr4:87277472..87279132,2	K562	blood:
7	chr4:87256963..87259889-chr4:87277472..87279132,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC10A6-4	chr4:87275683-87275797	NONHSAT097277
2	lnc-SLC10A6-4	chr4:87275683-87275797	NONHSAT097280
3	lnc-PTPN13-3	chr4:87259986-87260060	ucscGeneNc_uc003hpw_2
4	lnc-SLC10A6-4	chr4:87278020-87278205	NONHSAT097282
5	lnc-SLC10A6-4	chr4:87277615-87277672	NONHSAT097279
6	lnc-SLC10A6-4	chr4:87275681-87275797	NONHSAT097279
7	lnc-PTPN13-3	chr4:87260161-87260778	ucscGeneNc_uc003hpw_2
8	lnc-PTPN13-3	chr4:87267769-87267877	ucscGeneNc_uc003hpw_2
9	lnc-SLC10A6-3	chr4:87257471-87257767	NONHSAT097278
10	lnc-SLC10A6-4	chr4:87275683-87275797	NONHSAT097276
11	lnc-SLC10A6-4	chr4:87275721-87275797	NONHSAT097281

No data

Variant related genes	Relation type
MAPK10	TF binding region
RN7SKP96	TF binding region
MAPK10	CpG island
RN7SKP96	CpG island
ENSG00000252757	chromatin interactions
ENSG00000109339	chromatin interactions

Extended variants
information (count: 1380 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:1380 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs769378	chr4:87239764-87239765	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs531784110	chr4:87239850-87239851	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575488258	chr4:87239874-87239875	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545954249	chr4:87239908-87239909	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557901983	chr4:87239913-87239914	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs113034469	chr4:87239930-87239931	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540224720	chr4:87239973-87239974	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567954805	chr4:87240013-87240014	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs6531915	chr4:87240020-87240021	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs529630381	chr4:87240025-87240026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs186593775	chr4:87240033-87240034	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs373047549	chr4:87240063-87240064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs398107600	chr4:87240066-87240067	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191010869	chr4:87240068-87240069	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs6531916	chr4:87240082-87240083	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs551533182	chr4:87240119-87240120	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183682740	chr4:87240120-87240121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527746211	chr4:87240144-87240145	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs17449582	chr4:87240157-87240158	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs188674017	chr4:87240199-87240200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144768770	chr4:87240201-87240202	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs557277614	chr4:87240309-87240310	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7678691	chr4:87240367-87240368	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs539663976	chr4:87240383-87240384	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs12645370	chr4:87240411-87240412	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs116614809	chr4:87240421-87240422	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs539941283	chr4:87240422-87240423	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs557886861	chr4:87240424-87240425	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs555371287	chr4:87240431-87240432	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs113799790	chr4:87240538-87240539	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs371135230	chr4:87240588-87240589	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs543773669	chr4:87240598-87240599	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs4693139	chr4:87240623-87240624	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs116770426	chr4:87240688-87240689	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs192848103	chr4:87240696-87240697	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs574675860	chr4:87240710-87240711	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs560512744	chr4:87240759-87240760	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs4693140	chr4:87240799-87240800	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs527256493	chr4:87240876-87240877	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141974327	chr4:87240936-87240937	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531623911	chr4:87241065-87241066	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs529917546	chr4:87241112-87241113	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75460443	chr4:87241134-87241135	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372767009	chr4:87241142-87241143	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569174575	chr4:87241168-87241169	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183337582	chr4:87241206-87241207	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs76795483	chr4:87241219-87241220	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs150512855	chr4:87241241-87241242	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs139459457	chr4:87241242-87241243	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs533923645	chr4:87241248-87241249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Pancreatic cancer	17952125	CNVD
Colorectal cancer	20459617	CNVD
Cancer	20164919	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	22522925	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:364 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87224000-87242600	Weak transcription	Fetal Stomach	stomach
2	chr4:87232600-87247400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:87235200-87250200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:87235800-87242200	Weak transcription	Fetal Brain Male	brain
5	chr4:87239200-87240800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:87239400-87240000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:87239400-87252400	Weak transcription	Brain Angular Gyrus	brain
8	chr4:87239400-87254400	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:87239400-87258600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:87240000-87241800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:87240200-87241200	Enhancers	HMEC	breast
12	chr4:87240600-87241000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:87240600-87241200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:87240600-87241200	Enhancers	NHEK	skin
15	chr4:87240800-87241200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:87240800-87241600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:87241000-87241200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:87241200-87247200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:87241600-87243000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:87241800-87242800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:87242000-87270000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:87242800-87243800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:87243000-87243800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr4:87243000-87244600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:87243200-87243600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr4:87243200-87243600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr4:87243400-87243800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:87243400-87243800	Enhancers	Brain Germinal Matrix	brain
29	chr4:87243400-87243800	Enhancers	Fetal Kidney	kidney
30	chr4:87243400-87244000	Enhancers	Colon Smooth Muscle	Colon
31	chr4:87243800-87247200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:87243800-87247600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:87244600-87247200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:87247000-87248000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:87247200-87247600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr4:87247200-87247600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:87247200-87247800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:87247200-87247800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr4:87247200-87247800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr4:87247200-87248200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:87247200-87248200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr4:87247400-87247800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:87247400-87248000	Enhancers	Hela-S3	cervix
44	chr4:87247400-87248200	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr4:87247600-87250200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:87247600-87259600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr4:87247600-87273400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:87247800-87250000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:87247800-87252200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr4:87248200-87252000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links