Variant report
Variant | nsv462029 |
---|---|
Chromosome Location | chr5:28763652-28870503 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:600)
- CpG islands (count:488)
- Chromatin interactive region (count:37)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr5:28810841-28811178 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr5:28862973-28863184 | HepG2 | liver: | n/a | n/a |
3 | BHLHE40 | chr5:28814502-28814623 | K562 | blood: | n/a | n/a |
4 | BHLHE40 | chr5:28808920-28809724 | K562 | blood: | n/a | n/a |
5 | BHLHE40 | chr5:28816335-28816476 | K562 | blood: | n/a | n/a |
6 | BHLHE40 | chr5:28810355-28810693 | K562 | blood: | n/a | chr5:28810481-28810497 chr5:28810394-28810410 |
7 | BRCA1 | chr5:28766717-28767229 | Hela-S3 | cervix: | n/a | n/a |
8 | BRCA1 | chr5:28815213-28815234 | Hela-S3 | cervix: | n/a | n/a |
9 | CBX3 | chr5:28823373-28823651 | K562 | blood: | n/a | n/a |
10 | CBX3 | chr5:28809015-28809399 | K562 | blood: | n/a | n/a |
11 | CBX3 | chr5:28823321-28823730 | K562 | blood: | n/a | n/a |
12 | CCNT2 | chr5:28816425-28816641 | K562 | blood: | n/a | n/a |
13 | CCNT2 | chr5:28810313-28810825 | K562 | blood: | n/a | chr5:28810357-28810366 |
14 | CCNT2 | chr5:28809192-28810112 | K562 | blood: | n/a | n/a |
15 | CEBPB | chr5:28828802-28828896 | A549 | lung: | n/a | n/a |
16 | CEBPB | chr5:28818648-28818936 | K562 | blood: | n/a | chr5:28818791-28818802 |
17 | CEBPB | chr5:28834436-28834676 | HepG2 | liver: | n/a | chr5:28834587-28834598 |
18 | CEBPB | chr5:28763690-28763856 | A549 | lung: | n/a | chr5:28763789-28763800 |
19 | CEBPB | chr5:28763632-28764408 | HepG2 | liver: | n/a | chr5:28764292-28764305 chr5:28763789-28763800 |
20 | CEBPB | chr5:28831177-28831503 | A549 | lung: | n/a | chr5:28831343-28831354 |
21 | CEBPB | chr5:28834515-28834730 | K562 | blood: | n/a | chr5:28834587-28834598 |
22 | CEBPB | chr5:28831182-28831450 | H1-hESC | embryonic stem cell: | n/a | chr5:28831343-28831354 |
23 | CEBPB | chr5:28850602-28850862 | K562 | blood: | n/a | n/a |
24 | CEBPB | chr5:28763702-28764332 | Hela-S3 | cervix: | n/a | chr5:28764292-28764305 chr5:28763789-28763800 |
25 | CEBPB | chr5:28763672-28763927 | IMR90 | lung: | n/a | chr5:28763789-28763800 |
26 | CEBPB | chr5:28809192-28809322 | K562 | blood: | n/a | n/a |
27 | CEBPB | chr5:28862960-28863277 | HepG2 | liver: | n/a | n/a |
28 | CEBPB | chr5:28818678-28818966 | HepG2 | liver: | n/a | chr5:28818791-28818802 |
29 | CEBPB | chr5:28763630-28763938 | K562 | blood: | n/a | chr5:28763789-28763800 |
30 | CEBPB | chr5:28831210-28831505 | K562 | blood: | n/a | chr5:28831343-28831354 |
31 | CEBPB | chr5:28831202-28831533 | HepG2 | liver: | n/a | chr5:28831343-28831354 |
32 | CHD2 | chr5:28810281-28810330 | K562 | blood: | n/a | n/a |
33 | CHD2 | chr5:28810617-28810817 | K562 | blood: | n/a | n/a |
34 | CHD2 | chr5:28809029-28809592 | K562 | blood: | n/a | n/a |
35 | CTCF | chr5:28766740-28766890 | SK-N-SH_RA | brain: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
36 | CTCF | chr5:28809845-28809945 | K562 | blood: | n/a | n/a |
37 | CTCF | chr5:28766800-28766950 | GM06990 | blood: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
38 | CTCF | chr5:28779300-28779450 | HA-sp | spinal cord: | n/a | n/a |
39 | CTCF | chr5:28766689-28767012 | IMR90 | lung: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
40 | CTCF | chr5:28779428-28779524 | GM12878 | blood: | n/a | n/a |
41 | CTCF | chr5:28779412-28779530 | HepG2 | liver: | n/a | n/a |
42 | CTCF | chr5:28766760-28766910 | HVMF | connective: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
43 | CTCF | chr5:28766753-28766938 | HUVEC | blood vessel: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
44 | CTCF | chr5:28766687-28766993 | MCF-7 | breast: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
45 | CTCF | chr5:28766780-28766930 | HMEC | breast: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
46 | CTCF | chr5:28766700-28766850 | HCM | heart: | n/a | n/a |
47 | CTCF | chr5:28810380-28810530 | K562 | blood: | n/a | n/a |
48 | CTCF | chr5:28779317-28779599 | T-47D | breast: | n/a | n/a |
49 | CTCF | chr5:28766740-28766890 | HEK293 | kidney: | n/a | chr5:28766847-28766863 chr5:28766846-28766864 chr5:28766841-28766862 chr5:28766849-28766859 chr5:28766848-28766861 |
50 | CTCF | chr5:28779380-28779530 | HBMEC | blood vessel: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:28810148-28810198 | GM12892 | blood: | n/a |
2 | chr5:28809997-28810047 | AG09309 | skin: | n/a |
3 | chr5:28810148-28810198 | GM06990 | blood: | n/a |
4 | chr5:28799238-28799288 | H1-hESC | embryonic stem cell: | embryo |
5 | chr5:28810148-28810198 | CMK | blood: | n/a |
6 | chr5:28810645-28810695 | PANC-1 | pancreas: | n/a |
7 | chr5:28810645-28810695 | GM12891 | blood: | n/a |
8 | chr5:28809997-28810047 | NB4 | blood: | n/a |
9 | chr5:28809121-28809171 | HepG2 | liver: | n/a |
10 | chr5:28810402-28810452 | GM12892 | blood: | n/a |
11 | chr5:28810645-28810695 | ECC-1 | luminal epithelium: | n/a |
12 | chr5:28810402-28810452 | GM12878 | blood: | n/a |
13 | chr5:28810402-28810452 | SKMC | muscle: | n/a |
14 | chr5:28809121-28809171 | SK-N-SH_RA | brain: | n/a |
15 | chr5:28809037-28809087 | HEK293 | kidney: | embryo |
16 | chr5:28810402-28810452 | SK-N-SH_RA | brain: | n/a |
17 | chr5:28809622-28809672 | SKMC | muscle: | n/a |
18 | chr5:28810402-28810452 | SK-N-MC | brain: | n/a |
19 | chr5:28809997-28810047 | SK-N-SH | brain: | n/a |
20 | chr5:28809037-28809087 | MCF-7 | breast: | n/a |
21 | chr5:28799238-28799288 | PFSK-1 | brain: | n/a |
22 | chr5:28809997-28810047 | Jurkat | blood: | n/a |
23 | chr5:28809121-28809171 | GM12878 | blood: | n/a |
24 | chr5:28810645-28810695 | AG10803 | skin: | n/a |
25 | chr5:28810402-28810452 | SK-N-SH | brain: | n/a |
26 | chr5:28809121-28809171 | Hepatocyte | liver: | n/a |
27 | chr5:28810645-28810695 | SKMC | muscle: | n/a |
28 | chr5:28809997-28810047 | SK-N-SH_RA | brain: | n/a |
29 | chr5:28810402-28810452 | HAEpiC | amniotic membrane: | n/a |
30 | chr5:28809037-28809087 | Hela-S3 | cervix: | n/a |
31 | chr5:28810645-28810695 | LNCaP | prostate: | n/a |
32 | chr5:28799238-28799288 | HEK293 | kidney: | embryo |
33 | chr5:28809997-28810047 | GM12892 | blood: | n/a |
34 | chr5:28799238-28799288 | HRE | kidney: | n/a |
35 | chr5:28810402-28810452 | ovcar-3 | ovarian: | n/a |
36 | chr5:28809037-28809087 | Caco-2 | colon: | n/a |
37 | chr5:28810148-28810198 | HRCEpiC | kidney: | n/a |
38 | chr5:28810148-28810198 | SK-N-MC | brain: | n/a |
39 | chr5:28809037-28809087 | MCF10A-Er-Src | breast: | n/a |
40 | chr5:28810402-28810452 | K562 | blood: | n/a |
41 | chr5:28810402-28810452 | ProgFib | skin: | n/a |
42 | chr5:28810148-28810198 | HAEpiC | amniotic membrane: | n/a |
43 | chr5:28809037-28809087 | SK-N-MC | brain: | n/a |
44 | chr5:28809121-28809171 | NH-A | brain: | n/a |
45 | chr5:28810148-28810198 | HEEpiC | esophagus: | n/a |
46 | chr5:28799238-28799288 | A549 | lung: | n/a |
47 | chr5:28810148-28810198 | HRPEpiC | eye: | n/a |
48 | chr5:28809121-28809171 | NT2-D1 | testis: | n/a |
49 | chr5:28809121-28809171 | HCF | heart: | n/a |
50 | chr5:28810148-28810198 | PFSK-1 | brain: | n/a |
(count:37 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:28770203..28772237-chr6:49079734..49082291,2 | MCF-7 | breast: | |
2 | chr5:28848991..28851784-chr5:28856691..28858212,2 | K562 | blood: | |
3 | chr5:28836092..28838497-chr5:28839805..28842751,2 | MCF-7 | breast: | |
4 | chr5:28805163..28807259-chr5:28812094..28813798,2 | K562 | blood: | |
5 | chr5:28763389..28766520-chr5:28808448..28811312,3 | K562 | blood: | |
6 | chr5:28806282..28808048-chr5:28853726..28856182,2 | K562 | blood: | |
7 | chr5:28786798..28789363-chr5:28791647..28793398,2 | K562 | blood: | |
8 | chr5:28786798..28789363-chr5:28791647..28793398,2 | K562 | blood: | |
9 | chr5:28765020..28766870-chr5:28809812..28812642,2 | K562 | blood: | |
10 | chr5:28806282..28808048-chr5:28853726..28856182,2 | K562 | blood: | |
11 | chr5:28816134..28818756-chr5:28819776..28822041,3 | K562 | blood: | |
12 | chr5:28823907..28826639-chr5:28834141..28835828,2 | K562 | blood: | |
13 | chr5:28777228..28779572-chr5:28784624..28787544,2 | K562 | blood: | |
14 | chr5:28743630..28746249-chr5:28809920..28812616,2 | K562 | blood: | |
15 | chr5:28826049..28828145-chr5:28828270..28829851,2 | K562 | blood: | |
16 | chr5:28811938..28814493-chr5:28819966..28823203,3 | K562 | blood: | |
17 | chr1:121484566..121485406-chr5:28783478..28783978,2 | MCF-7 | breast: | |
18 | chr5:28808032..28811102-chr5:28813971..28817710,5 | K562 | blood: | |
19 | chr5:28344669..28345343-chr5:28766345..28767141,3 | MCF-7 | breast: | |
20 | chr5:28848991..28851784-chr5:28856691..28858212,2 | K562 | blood: | |
21 | chr5:28809387..28811298-chr5:29193650..29195834,2 | K562 | blood: | |
22 | chr5:28827388..28830378-chr5:28832041..28834686,2 | K562 | blood: | |
23 | chr5:28779022..28779987-chr5:28896759..28897898,5 | MCF-7 | breast: | |
24 | chr5:28771345..28773063-chr5:28782403..28784396,2 | K562 | blood: | |
25 | chr5:28765020..28766870-chr5:28809812..28812642,2 | K562 | blood: | |
26 | chr5:28805163..28807259-chr5:28812094..28813798,2 | K562 | blood: | |
27 | chr5:28771345..28773063-chr5:28782403..28784396,2 | K562 | blood: | |
28 | chr5:28826049..28828145-chr5:28828270..28829851,2 | K562 | blood: | |
29 | chr5:28344204..28345499-chr5:28766065..28767256,3 | MCF-7 | breast: | |
30 | chr5:28816134..28818756-chr5:28819776..28822041,3 | K562 | blood: | |
31 | chr5:28777228..28779572-chr5:28784624..28787544,2 | K562 | blood: | |
32 | chr5:28805922..28808420-chr5:28809202..28811186,4 | K562 | blood: | |
33 | chr5:28823907..28826639-chr5:28834141..28835828,2 | K562 | blood: | |
34 | chr5:28851055..28851753-chr7:86185395..86186230,2 | MCF-7 | breast: | |
35 | chr5:28836092..28838497-chr5:28839805..28842751,2 | MCF-7 | breast: | |
36 | chr5:28811938..28814493-chr5:28819966..28823203,3 | K562 | blood: | |
37 | chr5:28827388..28830378-chr5:28832041..28834686,2 | K562 | blood: |
(count:3 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CDH9-6 | chr5:28782785-28782942 | ENSG00000250453 |
2 | lnc-CDH9-6 | chr5:28809063-28809356 | ENSG00000250453 |
3 | lnc-CDH6-16 | chr5:28808645-28809362 | NONHSAT100821 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000250453 | TF binding region |
ENSG00000270495 | TF binding region |
ENSG00000250453 | CpG island |
ENSG00000270495 | CpG island |
ENSG00000270495 | chromatin interactions |
ENSG00000250453 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs1160444 | chr5:28763652-28763653 | Enhancers | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs144120766 | chr5:28763684-28763685 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
3 | rs145984998 | chr5:28763693-28763694 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
4 | rs533648206 | chr5:28763867-28763868 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
5 | rs562966351 | chr5:28763933-28763934 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
6 | rs2876977 | chr5:28763941-28763942 | Inactive region | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs73749805 | chr5:28764008-28764009 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
8 | rs550984482 | chr5:28764070-28764071 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
9 | rs35404382 | chr5:28764098-28764099 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
10 | rs7711476 | chr5:28764175-28764176 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
11 | rs184833209 | chr5:28764176-28764177 | Inactive region | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
12 | rs567604642 | chr5:28764214-28764215 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
13 | rs532167265 | chr5:28764218-28764219 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
14 | rs537996413 | chr5:28764246-28764247 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
15 | rs551864656 | chr5:28764263-28764264 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
16 | rs559397510 | chr5:28764294-28764295 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
17 | rs555930153 | chr5:28764308-28764309 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
18 | rs571136961 | chr5:28764313-28764314 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
19 | rs7731931 | chr5:28764323-28764324 | Enhancers | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
20 | rs368321407 | chr5:28764342-28764343 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
21 | rs553750521 | chr5:28764415-28764416 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
22 | rs560039694 | chr5:28764499-28764500 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
23 | rs372929787 | chr5:28764520-28764521 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
24 | rs572316228 | chr5:28764522-28764523 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
25 | rs140630634 | chr5:28764608-28764609 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
26 | rs528769883 | chr5:28764610-28764611 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
27 | rs16898100 | chr5:28764627-28764628 | Enhancers | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs554599307 | chr5:28764630-28764631 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
29 | rs190163944 | chr5:28764631-28764632 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs568620346 | chr5:28764651-28764652 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs563046509 | chr5:28764672-28764673 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs533534575 | chr5:28764692-28764693 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs181912808 | chr5:28764738-28764739 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs10461848 | chr5:28764743-28764744 | Enhancers | Chromatin interactive region | 2 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs144256031 | chr5:28764751-28764752 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs547849108 | chr5:28764771-28764772 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
37 | rs527989661 | chr5:28764787-28764788 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
38 | rs72758522 | chr5:28764796-28764797 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
39 | rs145595715 | chr5:28764834-28764835 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
40 | rs567692281 | chr5:28764845-28764846 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
41 | rs557544823 | chr5:28764847-28764848 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
42 | rs539851417 | chr5:28764849-28764850 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
43 | rs575782059 | chr5:28764853-28764854 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
44 | rs553091158 | chr5:28764913-28764914 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
45 | rs117186359 | chr5:28764921-28764922 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
46 | rs369300581 | chr5:28764932-28764933 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
47 | rs111968548 | chr5:28764990-28764991 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
48 | rs538406586 | chr5:28765023-28765024 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
49 | rs532907941 | chr5:28765058-28765059 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
50 | rs111959589 | chr5:28765062-28765063 | Enhancers | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Salivary gland tumor | 18059337 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Cervical squamous cell carcinoma | 21590768 | CNVD |
Non-small cell lung cancer | 20864512 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Liposarcoma | 21253554 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Cervical Cancer | 21857958 | CNVD |
Cervical cancer | 21062161 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Oral cancer | 21386901 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Cervical cancer | 18559093 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Malaria | 21533027 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Gastric cancer | 22152101 | CNVD |
Oesophago-gastric ulcer | 22152101 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Cancer | 20164919 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Multiple myeloma | 17550852 | CNVD |
prenatal diagnosis | 22389664 | CNVD |
Bladder cancer | 21909424 | CNVD |
DNA damage stimulus | 22844521 | CNVD |
DNA repair | 22844521 | CNVD |
Breast cancer | 21785460 | CNVD |
Spinal muscular atrophy | 22422766 | CNVD |
Spinal muscular atrophy | 22558076 | CNVD |
Spinal muscular atrophy | 21320981 | CNVD |
Spinal muscular atrophy | 21762474 | CNVD |
Breast cancer | 21858162 | CNVD |
Esophageal adenocarcinoma | 19417022 | CNVD |
Cancer | 16751803 | CNVD |
Breast cancer | 16608533 | CNVD |
Autism | 22495311 | CNVD |
Melanoma | 18172304 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Intellectual disability | 22102821 | CNVD |
Lung cancer | 16740712 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Prostate cancer | 21965145 | CNVD |
Cancer | 21183584 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Breast cancer | 17603634 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Compulsive disorder | 18923513 | CNVD |
Epilepsy | 18923513 | CNVD |
Prader-willi syndrome | 18923513 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Lung cancer | 18438408 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Glioma | 20126413 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Breast cancer | 22032731 | CNVD |
Esophageal cancer | 20955586 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:28763200-28763800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
2 | chr5:28764200-28765000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
3 | chr5:28764200-28765200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
4 | chr5:28764400-28765200 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
5 | chr5:28765200-28767600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
6 | chr5:28767000-28767400 | Enhancers | A549 | lung |
7 | chr5:28767600-28768200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
8 | chr5:28777400-28778600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
9 | chr5:28781800-28784200 | Weak transcription | K562 | blood |
10 | chr5:28789200-28790200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
11 | chr5:28789600-28790200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
12 | chr5:28806200-28813200 | Active TSS | K562 | blood |
13 | chr5:28807200-28807800 | Enhancers | Hela-S3 | cervix |
14 | chr5:28808400-28808600 | Enhancers | Placenta | Placenta |
15 | chr5:28808400-28809200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
16 | chr5:28808600-28810800 | ZNF genes & repeats | Placenta | Placenta |
17 | chr5:28809000-28810600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
18 | chr5:28809200-28809400 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
19 | chr5:28809400-28809800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
20 | chr5:28809800-28810400 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
21 | chr5:28810800-28811400 | Active TSS | Placenta | Placenta |
22 | chr5:28813200-28816600 | Weak transcription | K562 | blood |
23 | chr5:28822200-28822800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
24 | chr5:28823200-28823800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
25 | chr5:28825600-28827000 | Enhancers | Fetal Heart | heart |
26 | chr5:28857600-28859800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
27 | chr5:28859800-28860000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
28 | chr5:28860000-28861600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
29 | chr5:28861400-28862600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
30 | chr5:28861600-28862000 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
31 | chr5:28862000-28862400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
32 | chr5:28862200-28863000 | Enhancers | HepG2 | liver |
33 | chr5:28862400-28863600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
34 | chr5:28863600-28864200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |