Variant report

Variant	nsv462915
Chromosome Location	chr6:38728142-38773293
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:661)
CpG islands
(count:62)
Chromatin interactive
region (count:31)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:661 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:38750508-38750961	K562	blood:	n/a	n/a
2	ARID3A	chr6:38764463-38764646	K562	blood:	n/a	n/a
3	ARID3A	chr6:38763390-38763693	K562	blood:	n/a	n/a
4	ATF1	chr6:38750462-38750667	K562	blood:	n/a	n/a
5	ATF1	chr6:38763354-38763909	K562	blood:	n/a	n/a
6	ATF1	chr6:38739207-38739382	K562	blood:	n/a	n/a
7	ATF1	chr6:38764286-38764488	K562	blood:	n/a	n/a
8	BATF	chr6:38736036-38736473	GM12878	blood:	n/a	n/a
9	BATF	chr6:38736228-38736421	GM12878	blood:	n/a	n/a
10	BATF	chr6:38742983-38743475	GM12878	blood:	n/a	n/a
11	BATF	chr6:38743752-38743971	GM12878	blood:	n/a	n/a
12	BCL11A	chr6:38736234-38736486	GM12878	blood:	n/a	n/a
13	BCL3	chr6:38736186-38736710	GM12878	blood:	n/a	n/a
14	BHLHE40	chr6:38764025-38764599	K562	blood:	n/a	n/a
15	BHLHE40	chr6:38763382-38763699	K562	blood:	n/a	n/a
16	BHLHE40	chr6:38743710-38743906	GM12878	blood:	n/a	n/a
17	CCNT2	chr6:38763875-38764670	K562	blood:	n/a	n/a
18	CCNT2	chr6:38739316-38739387	K562	blood:	n/a	n/a
19	CCNT2	chr6:38738738-38738938	K562	blood:	n/a	n/a
20	CCNT2	chr6:38750404-38750686	K562	blood:	n/a	n/a
21	CCNT2	chr6:38756947-38757684	K562	blood:	n/a	n/a
22	CCNT2	chr6:38741117-38741185	K562	blood:	n/a	n/a
23	CEBPB	chr6:38767407-38767603	Hela-S3	cervix:	n/a	chr6:38767454-38767465
24	CEBPB	chr6:38739185-38739223	H1-hESC	embryonic stem cell:	n/a	n/a
25	CEBPB	chr6:38760013-38760602	MCF-7	breast:	n/a	chr6:38760331-38760342 chr6:38760330-38760341
26	CEBPB	chr6:38727941-38728240	IMR90	lung:	n/a	chr6:38728085-38728096
27	CEBPB	chr6:38767255-38767658	MCF-7	breast:	n/a	chr6:38767454-38767465
28	CEBPB	chr6:38727906-38728256	HepG2	liver:	n/a	chr6:38728085-38728096
29	CEBPB	chr6:38760130-38760566	MCF-7	breast:	n/a	chr6:38760331-38760342 chr6:38760330-38760341
30	CEBPB	chr6:38760189-38760490	HepG2	liver:	n/a	chr6:38760331-38760342 chr6:38760330-38760341
31	CEBPB	chr6:38739074-38739408	IMR90	lung:	n/a	chr6:38739238-38739249
32	CEBPB	chr6:38767405-38767605	HepG2	liver:	n/a	chr6:38767454-38767465
33	CEBPB	chr6:38739057-38739394	HepG2	liver:	n/a	chr6:38739238-38739249
34	CEBPB	chr6:38767258-38767689	MCF-7	breast:	n/a	chr6:38767454-38767465
35	CEBPB	chr6:38764286-38764507	K562	blood:	n/a	n/a
36	CEBPB	chr6:38767299-38767639	K562	blood:	n/a	chr6:38767454-38767465
37	CEBPB	chr6:38739047-38739368	K562	blood:	n/a	chr6:38739238-38739249
38	CEBPB	chr6:38767300-38767547	K562	blood:	n/a	chr6:38767454-38767465
39	CEBPB	chr6:38739060-38739426	K562	blood:	n/a	chr6:38739238-38739249
40	CEBPB	chr6:38764238-38764586	K562	blood:	n/a	n/a
41	CEBPB	chr6:38767423-38767511	A549	lung:	n/a	chr6:38767454-38767465
42	CEBPB	chr6:38760234-38760468	A549	lung:	n/a	chr6:38760331-38760342 chr6:38760330-38760341
43	CEBPB	chr6:38727904-38728261	K562	blood:	n/a	chr6:38728085-38728096
44	CEBPB	chr6:38739118-38739345	A549	lung:	n/a	chr6:38739238-38739249
45	CEBPB	chr6:38727981-38728159	H1-hESC	embryonic stem cell:	n/a	chr6:38728085-38728096
46	CEBPD	chr6:38750373-38750857	K562	blood:	n/a	n/a
47	CEBPD	chr6:38764107-38764545	K562	blood:	n/a	n/a
48	CEBPD	chr6:38750372-38750740	K562	blood:	n/a	n/a
49	CHD2	chr6:38743698-38743897	GM12878	blood:	n/a	n/a
50	CTCF	chr6:38766540-38766690	GM12871	blood:	n/a	n/a

(count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:38751903-38751953	MCF10A-Er-Src	breast:	n/a
2	chr6:38751903-38751953	MCF10A-Er-Src	breast:	n/a
3	chr6:38751903-38751953	ovcar-3	ovarian:	n/a
4	chr6:38751903-38751953	ProgFib	skin:	n/a
5	chr6:38751903-38751953	U87	brain:	n/a
6	chr6:38751903-38751953	HCF	heart:	n/a
7	chr6:38751903-38751953	NT2-D1	testis:	n/a
8	chr6:38751903-38751953	NHDF-neo	bronchial:	n/a
9	chr6:38751903-38751953	HUVEC	blood vessel:	n/a
10	chr6:38751903-38751953	HepG2	liver:	n/a
11	chr6:38751903-38751953	GM06990	blood:	n/a
12	chr6:38751903-38751953	AG09309	skin:	n/a
13	chr6:38751903-38751953	AG04449	skin:	fetal
14	chr6:38751903-38751953	LNCaP	prostate:	n/a
15	chr6:38751903-38751953	AG04450	lung:	fetal
16	chr6:38751903-38751953	GM12878	blood:	n/a
17	chr6:38751903-38751953	HRPEpiC	eye:	n/a
18	chr6:38751903-38751953	AoSMC	blood vessel:	n/a
19	chr6:38751903-38751953	Jurkat	blood:	n/a
20	chr6:38751903-38751953	SK-N-SH	brain:	n/a
21	chr6:38751903-38751953	SKMC	muscle:	n/a
22	chr6:38751903-38751953	HIPEpiC	eye:	n/a
23	chr6:38751903-38751953	RPTEC	kidney:	n/a
24	chr6:38751903-38751953	SAEC	small airway:	n/a
25	chr6:38751903-38751953	SK-N-MC	brain:	n/a
26	chr6:38751903-38751953	HEEpiC	esophagus:	n/a
27	chr6:38751903-38751953	GM12892	blood:	n/a
28	chr6:38751903-38751953	PFSK-1	brain:	n/a
29	chr6:38751903-38751953	PANC-1	pancreas:	n/a
30	chr6:38751903-38751953	NB4	blood:	n/a
31	chr6:38751903-38751953	K562	blood:	n/a
32	chr6:38751903-38751953	Hela-S3	cervix:	n/a
33	chr6:38751903-38751953	HCM	heart:	n/a
34	chr6:38751903-38751953	GM12891	blood:	n/a
35	chr6:38751903-38751953	T-47D	breast:	n/a
36	chr6:38751903-38751953	HMEC	breast:	n/a
37	chr6:38751903-38751953	ECC-1	luminal epithelium:	n/a
38	chr6:38751903-38751953	Caco-2	colon:	n/a
39	chr6:38751903-38751953	MCF-7	breast:	n/a
40	chr6:38751903-38751953	IMR90	lung:	fetal
41	chr6:38751903-38751953	HNPCEpiC	eye:	n/a
42	chr6:38751903-38751953	AG10803	skin:	n/a
43	chr6:38751903-38751953	BE2_C	brain:	n/a
44	chr6:38751903-38751953	HRE	kidney:	n/a
45	chr6:38751903-38751953	CMK	blood:	n/a
46	chr6:38751903-38751953	A549	lung:	n/a
47	chr6:38751903-38751953	HPAEpiC	pulmonary alveolar:	n/a
48	chr6:38751903-38751953	NH-A	brain:	n/a
49	chr6:38751903-38751953	PrEC	prostate:	n/a
50	chr6:38751903-38751953	BJ	skin:	n/a

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:38749592..38751313-chr6:38753149..38755340,2	MCF-7	breast:
2	chr6:38761644..38764833-chr6:38770187..38773339,3	K562	blood:
3	chr6:38745585..38748402-chr6:38749939..38752656,4	K562	blood:
4	chr6:38749592..38751313-chr6:38753149..38755340,2	MCF-7	breast:
5	chr6:38756316..38758833-chr6:38761826..38764671,2	MCF-7	breast:
6	chr6:38742135..38744348-chr6:38746866..38748899,2	MCF-7	breast:
7	chr6:38676013..38676879-chr6:38741072..38741623,2	MCF-7	breast:
8	chr6:38758290..38761178-chr6:38769985..38772516,2	K562	blood:
9	chr6:38771295..38773391-chr6:38780024..38781597,2	K562	blood:
10	chr6:38761644..38764833-chr6:38770187..38773339,3	K562	blood:
11	chr6:38680060..38681577-chr6:38747521..38749973,2	K562	blood:
12	chr6:38760562..38763283-chr6:38847483..38849183,2	K562	blood:
13	chr6:38767591..38769178-chr6:38771551..38774399,2	K562	blood:
14	chr6:38745585..38748255-chr6:38749939..38751759,3	K562	blood:
15	chr6:38753809..38755972-chr6:38756786..38759773,2	MCF-7	breast:
16	chr6:38742135..38744348-chr6:38746866..38748899,2	MCF-7	breast:
17	chr6:38763255..38763863-chr6:38901115..38901700,2	MCF-7	breast:
18	chr6:38763015..38763945-chr6:38839605..38840402,3	MCF-7	breast:
19	chr6:38758085..38759601-chr6:38760717..38763383,2	K562	blood:
20	chr6:38762200..38765807-chr6:38769309..38772341,3	K562	blood:
21	chr6:38722850..38724981-chr6:38761101..38763461,2	MCF-7	breast:
22	chr6:38745585..38748402-chr6:38749939..38752656,4	K562	blood:
23	chr6:38762200..38765807-chr6:38769309..38772341,3	K562	blood:
24	chr6:38767591..38769178-chr6:38771551..38774399,2	K562	blood:
25	chr6:38745585..38748255-chr6:38749939..38751759,3	K562	blood:
26	chr6:38753809..38755972-chr6:38756786..38759773,2	MCF-7	breast:
27	chr6:38758085..38759601-chr6:38760717..38763383,2	K562	blood:
28	chr6:38758290..38761178-chr6:38769985..38772516,2	K562	blood:
29	chr6:38756306..38758851-chr7:124960777..124963063,2	MCF-7	breast:
30	chr6:38756316..38758833-chr6:38761826..38764671,2	MCF-7	breast:
31	chr6:38670515..38672545-chr6:38737534..38740411,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GLP1R-3	chr6:38730681-38732470	NONHSAT112331

No data

Variant related genes	Relation type
ENSG00000219273	TF binding region
ENSG00000219273	CpG island
ENSG00000124767	chromatin interactions

Extended variants
information (count: 1871 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:1871 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1678677	chr6:38728142-38728143	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs536898275	chr6:38728198-38728199	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs11391110	chr6:38728236-38728237	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs397687027	chr6:38728247-38728248	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs1678678	chr6:38728259-38728260	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs576391844	chr6:38728262-38728263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs545413923	chr6:38728329-38728330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs559327378	chr6:38728338-38728339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs2654448	chr6:38728354-38728355	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs115793904	chr6:38728357-38728358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs150997589	chr6:38728390-38728391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs141136699	chr6:38728398-38728399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs560752818	chr6:38728421-38728422	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs544888310	chr6:38728436-38728437	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs564791599	chr6:38728439-38728440	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs533695691	chr6:38728503-38728504	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs546665076	chr6:38728521-38728522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs533945227	chr6:38728531-38728532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs566900926	chr6:38728537-38728538	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529367383	chr6:38728627-38728628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs549462266	chr6:38728628-38728629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567872035	chr6:38728636-38728637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs144575999	chr6:38728672-38728673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369531891	chr6:38728705-38728706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs386700330	chr6:38728713-38728714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs72849126	chr6:38728714-38728715	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs113135827	chr6:38728751-38728752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs190243424	chr6:38728810-38728811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182824716	chr6:38728820-38728821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561061085	chr6:38728842-38728843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs398084874	chr6:38728850-38728851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs202240366	chr6:38728851-38728852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185216384	chr6:38729006-38729007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs13213008	chr6:38729038-38729039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs543180579	chr6:38729044-38729045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376697842	chr6:38729178-38729179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs138543358	chr6:38729183-38729184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs575880569	chr6:38729205-38729206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149254080	chr6:38729217-38729218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs115849503	chr6:38729230-38729231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371315228	chr6:38729245-38729246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs9470928	chr6:38729282-38729283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs2448400	chr6:38729289-38729290	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs112124194	chr6:38729316-38729317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs140275450	chr6:38729341-38729342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560243698	chr6:38729360-38729361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs529295761	chr6:38729412-38729413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373655787	chr6:38729436-38729437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs117322429	chr6:38729448-38729449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2448401	chr6:38729458-38729459	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Lung cancer	19153074	CNVD
Ovarian cancer	21720365	CNVD
Melanoma	21693616	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Breast cancer	16397240	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Osteosarcoma	21197465	CNVD
Gastric cancer	24379144	CNVD
Neuroblastoma	18923191	CNVD
abnormal development	18461090	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:251 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38706200-38738600	Weak transcription	K562	blood
2	chr6:38723400-38738400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:38724200-38728400	Weak transcription	NHEK	skin
4	chr6:38728400-38728600	Enhancers	NHEK	skin
5	chr6:38728600-38729200	Weak transcription	NHEK	skin
6	chr6:38730200-38731400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:38730400-38730800	Enhancers	Brain Germinal Matrix	brain
8	chr6:38730400-38730800	Enhancers	Fetal Brain Male	brain
9	chr6:38730400-38730800	Enhancers	Gastric	stomach
10	chr6:38730400-38731400	Enhancers	Colon Smooth Muscle	Colon
11	chr6:38730600-38730800	Enhancers	Spleen	Spleen
12	chr6:38730600-38731000	Enhancers	Rectal Smooth Muscle	rectum
13	chr6:38730800-38731600	Weak transcription	Spleen	Spleen
14	chr6:38731600-38732000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:38735200-38736000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr6:38735200-38736200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:38735400-38736800	Enhancers	GM12878-XiMat	blood
18	chr6:38735600-38736000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:38735600-38736000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:38735600-38736200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:38735600-38736200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:38735800-38736200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:38736000-38736200	Enhancers	Esophagus	oesophagus
24	chr6:38736800-38739000	Weak transcription	GM12878-XiMat	blood
25	chr6:38738200-38738600	Enhancers	HUVEC	blood vessel
26	chr6:38738200-38738800	Enhancers	NHEK	skin
27	chr6:38738200-38739800	Enhancers	HMEC	breast
28	chr6:38738200-38740200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:38738400-38739800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:38738400-38740200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:38738600-38739400	Flanking Active TSS	HUVEC	blood vessel
32	chr6:38738600-38739400	Enhancers	K562	blood
33	chr6:38738800-38739000	Flanking Active TSS	NHEK	skin
34	chr6:38738800-38739400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:38738800-38739400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:38738800-38739800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:38739000-38739200	Enhancers	NHEK	skin
38	chr6:38739000-38739600	Enhancers	GM12878-XiMat	blood
39	chr6:38739000-38739800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr6:38739200-38739400	Flanking Active TSS	NHEK	skin
41	chr6:38739200-38739600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:38739400-38739800	Enhancers	HUVEC	blood vessel
43	chr6:38739400-38739800	Enhancers	NHEK	skin
44	chr6:38739400-38742400	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr6:38739400-38746600	Weak transcription	K562	blood
46	chr6:38739600-38741000	Weak transcription	GM12878-XiMat	blood
47	chr6:38739600-38744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:38739800-38742600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr6:38739800-38743800	Weak transcription	NHEK	skin
50	chr6:38739800-38744200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links