Variant report

Variant	nsv464516
Chromosome Location	chr7:63832923-63881238
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
2	lnc-ZNF736-2	chr7:63849266-63849519	XLOC_006124
3	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
4	lnc-ZNF736-2	chr7:63834825-63834944	XLOC_006124

Variant related genes	Relation type
CDX2	miRNA target sites
RAB5C	miRNA target sites

Extended variants
information (count: 167 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:167 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9647727	chr7:63832923-63832924	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs576169367	chr7:63832946-63832947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs117615949	chr7:63832963-63832964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs116185161	chr7:63833000-63833001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs527810046	chr7:63833029-63833030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547449940	chr7:63833040-63833041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564159707	chr7:63833094-63833095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs533107167	chr7:63833109-63833110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs550214432	chr7:63833121-63833122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs78242117	chr7:63833147-63833148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149925539	chr7:63833148-63833149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs570366983	chr7:63833150-63833151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs57320552	chr7:63833152-63833153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184887001	chr7:63833163-63833164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs535770285	chr7:63833164-63833165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549580884	chr7:63833232-63833233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs144815289	chr7:63833249-63833250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs533891140	chr7:63833255-63833256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75261843	chr7:63833295-63833296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs607988	chr7:63833301-63833302	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs573365293	chr7:63833514-63833515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146687247	chr7:63833515-63833516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs539399423	chr7:63833518-63833519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374478475	chr7:63833555-63833556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147919337	chr7:63833573-63833574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576334815	chr7:63833587-63833588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541738315	chr7:63833608-63833609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74812211	chr7:63833647-63833648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs17139079	chr7:63833660-63833661	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs541126724	chr7:63833771-63833772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189781257	chr7:63833811-63833812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs180914599	chr7:63833823-63833824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185964971	chr7:63833840-63833841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs539745426	chr7:63833879-63833880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs549837128	chr7:63833898-63833899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs115832884	chr7:63833908-63833909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs113730582	chr7:63833943-63833944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs73368071	chr7:63833944-63833945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535181376	chr7:63833974-63833975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531194977	chr7:63834042-63834043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547524263	chr7:63834051-63834052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs570603616	chr7:63834077-63834078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs72503375	chr7:63834160-63834161	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs556153179	chr7:63834170-63834171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs181741469	chr7:63834197-63834198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532460572	chr7:63834201-63834202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs186209249	chr7:63834283-63834284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs572032845	chr7:63834290-63834291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs535761070	chr7:63834296-63834297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs35231997	chr7:63834299-63834300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63828600-63834600	Weak transcription	Fetal Heart	heart
2	chr7:63845800-63846200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr7:63849800-63850000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:63850600-63851000	Active TSS	Fetal Heart	heart
5	chr7:63851400-63852000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr7:63865200-63865400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:63867600-63867800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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