Variant report

Variant	nsv465636
Chromosome Location	chr8:34649550-34710118
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:34703366..34705867-chr8:34708071..34710392,2	K562	blood:
2	chr8:34703366..34705867-chr8:34708071..34710392,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UNC5D-3	chr8:34650276-34650462	XLOC_006770
2	lnc-UNC5D-3	chr8:34650275-34650462	NONHSAT125996

Extended variants
information (count: 2040 )
Associated
traits (count: 118 )

Variant overlapped rSNPs/rCNVs (count:2040 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189895452	chr8:34650279-34650280	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs183223889	chr8:34650280-34650281	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs568043744	chr8:34650296-34650297	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs535456454	chr8:34650305-34650306	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs528482191	chr8:34650347-34650348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs188085106	chr8:34650366-34650367	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs569450320	chr8:34650430-34650431	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs183001828	chr8:34657016-34657017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs573183959	chr8:34657038-34657039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs539653059	chr8:34657052-34657053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557781897	chr8:34657067-34657068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs111375034	chr8:34657103-34657104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs114939141	chr8:34657132-34657133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs16883020	chr8:34657160-34657161	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs115489492	chr8:34657161-34657162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs150350170	chr8:34657451-34657452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs577118958	chr8:34657474-34657475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561495413	chr8:34657567-34657568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528895351	chr8:34657620-34657621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550950822	chr8:34657633-34657634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs138018663	chr8:34657637-34657638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs80010077	chr8:34657643-34657644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs151187707	chr8:34657650-34657651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs551549771	chr8:34657658-34657659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs185383130	chr8:34657659-34657660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199756773	chr8:34657660-34657661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549478701	chr8:34657679-34657680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs567519544	chr8:34657728-34657729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11312292	chr8:34657757-34657758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs78800013	chr8:34657774-34657775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556931118	chr8:34657796-34657797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530184394	chr8:34657830-34657831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541988411	chr8:34657857-34657858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575608422	chr8:34657889-34657890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75113037	chr8:34657894-34657895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs7818196	chr8:34657898-34657899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs527499652	chr8:34657899-34657900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552473570	chr8:34657917-34657918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs367728321	chr8:34657921-34657922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544312704	chr8:34657945-34657946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs560773651	chr8:34657974-34657975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143123570	chr8:34658021-34658022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200998181	chr8:34658039-34658040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369894056	chr8:34658064-34658065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111736128	chr8:34658126-34658127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs561828558	chr8:34658146-34658147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs551605023	chr8:34658154-34658155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs2685605	chr8:34658158-34658159	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs7840022	chr8:34658185-34658186	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs182587462	chr8:34658194-34658195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:118)

Disease	PMID	Source
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	21806811	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hepatocellular carcinoma	16750200	CNVD
Bladder cancer	19088036	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	20459607	CNVD
Renal cell carcinoma	18765545	CNVD
Colorectal cancer	16912164	CNVD
Neuroticism	17667963	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	17001308	CNVD
Breast cancer	17157792	CNVD
Cancer	17001308	CNVD
Cancer	18840272	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	18382360	CNVD
Ductal carcinoma	18381933	CNVD
Breast cancer	21328542	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Intellectual disability	22045946	CNVD
Lung cancer	17925434	CNVD
Uveal melanoma	20484589	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34657000-34657200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:34657400-34663000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:34663000-34663200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:34663200-34673000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:34669600-34669800	Enhancers	Brain Hippocampus Middle	brain
6	chr8:34669800-34670200	Enhancers	Brain Angular Gyrus	brain
7	chr8:34669800-34670800	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:34669800-34670800	Enhancers	Brain Substantia Nigra	brain
9	chr8:34670800-34671000	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr8:34670800-34671200	Active TSS	Brain Substantia Nigra	brain
11	chr8:34671000-34671400	Active TSS	Brain Hippocampus Middle	brain
12	chr8:34673000-34673400	Strong transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:34673000-34673400	ZNF genes & repeats	Pancreas	Pancrea
14	chr8:34673400-34701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:34675400-34675800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:34675600-34675800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr8:34675600-34675800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:34675600-34676000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:34675600-34676000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:34675800-34676000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr8:34675800-34677400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:34676000-34677600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:34676400-34678400	Enhancers	HUVEC	blood vessel
24	chr8:34677200-34678400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:34677200-34678400	Enhancers	NH-A	brain
26	chr8:34677400-34678400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:34677400-34678400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:34677600-34678200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:34677600-34678200	Enhancers	Brain Germinal Matrix	brain
30	chr8:34677600-34678400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr8:34677600-34678400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:34677600-34678400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr8:34677600-34678400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr8:34677600-34678400	Enhancers	HMEC	breast
35	chr8:34677800-34678400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr8:34684600-34684800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:34687000-34687600	Enhancers	HMEC	breast
38	chr8:34687000-34688600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:34687200-34687600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:34687600-34688800	Weak transcription	HMEC	breast
41	chr8:34687600-34689400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr8:34688800-34690800	Enhancers	HMEC	breast
43	chr8:34689400-34690400	Enhancers	HUVEC	blood vessel
44	chr8:34689400-34690600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:34690000-34690400	Enhancers	NH-A	brain
46	chr8:34690400-34695000	Weak transcription	HUVEC	blood vessel
47	chr8:34690600-34694600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:34694600-34696600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:34694600-34696600	Enhancers	HMEC	breast
50	chr8:34694800-34695200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links