Variant report

Variant	nsv466090
Chromosome Location	chr9:3237378-3349487
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:3343654-3344224	HepG2	liver:	n/a	n/a
2	BACH1	chr9:3241415-3241614	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr9:3261560-3261752	H1-hESC	embryonic stem cell:	n/a	n/a
4	BATF	chr9:3274410-3274648	GM12878	blood:	n/a	n/a
5	BATF	chr9:3299884-3300198	GM12878	blood:	n/a	n/a
6	BATF	chr9:3263225-3263487	GM12878	blood:	n/a	chr9:3263379-3263388
7	BATF	chr9:3281448-3281693	GM12878	blood:	n/a	n/a
8	BATF	chr9:3281402-3281735	GM12878	blood:	n/a	n/a
9	BATF	chr9:3299902-3300171	GM12878	blood:	n/a	n/a
10	BCL11A	chr9:3343747-3343979	GM12878	blood:	n/a	n/a
11	BCL11A	chr9:3299966-3300234	GM12878	blood:	n/a	chr9:3300058-3300067
12	BCL11A	chr9:3343632-3343983	GM12878	blood:	n/a	n/a
13	BCL3	chr9:3343052-3343374	GM12878	blood:	n/a	n/a
14	BCLAF1	chr9:3240643-3241100	GM12878	blood:	n/a	n/a
15	BCLAF1	chr9:3299829-3300317	GM12878	blood:	n/a	chr9:3300058-3300067
16	BHLHE40	chr9:3299961-3300253	GM12878	blood:	n/a	n/a
17	BHLHE40	chr9:3257916-3257925	GM12878	blood:	n/a	n/a
18	BHLHE40	chr9:3343719-3343945	HepG2	liver:	n/a	n/a
19	BHLHE40	chr9:3240677-3241034	GM12878	blood:	n/a	n/a
20	BRCA1	chr9:3312306-3312402	GM12878	blood:	n/a	n/a
21	CEBPB	chr9:3306690-3307017	HepG2	liver:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
22	CEBPB	chr9:3238348-3238618	HepG2	liver:	n/a	chr9:3238444-3238457 chr9:3238444-3238455
23	CEBPB	chr9:3281870-3282210	IMR90	lung:	n/a	chr9:3282041-3282052 chr9:3282041-3282050
24	CEBPB	chr9:3243740-3244076	HepG2	liver:	n/a	chr9:3243918-3243929
25	CEBPB	chr9:3256609-3257250	IMR90	lung:	n/a	n/a
26	CEBPB	chr9:3343046-3343246	A549	lung:	n/a	n/a
27	CEBPB	chr9:3252655-3252855	HepG2	liver:	n/a	chr9:3252736-3252747
28	CEBPB	chr9:3258925-3259226	IMR90	lung:	n/a	chr9:3259056-3259067
29	CEBPB	chr9:3238308-3238625	IMR90	lung:	n/a	chr9:3238444-3238457 chr9:3238444-3238455
30	CEBPB	chr9:3288996-3289072	HepG2	liver:	n/a	n/a
31	CEBPB	chr9:3256616-3256833	K562	blood:	n/a	n/a
32	CEBPB	chr9:3306790-3307016	Hela-S3	cervix:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
33	CEBPB	chr9:3245294-3245494	HepG2	liver:	n/a	n/a
34	CEBPB	chr9:3243794-3243977	HepG2	liver:	n/a	chr9:3243918-3243929
35	CEBPB	chr9:3243837-3243957	K562	blood:	n/a	chr9:3243918-3243929
36	CEBPB	chr9:3281926-3282134	HepG2	liver:	n/a	chr9:3282041-3282052 chr9:3282041-3282050
37	CEBPB	chr9:3258936-3259232	HepG2	liver:	n/a	chr9:3259056-3259067
38	CEBPB	chr9:3258942-3259174	K562	blood:	n/a	chr9:3259056-3259067
39	CEBPB	chr9:3306688-3306885	H1-hESC	embryonic stem cell:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
40	CEBPB	chr9:3306799-3306969	K562	blood:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
41	CEBPB	chr9:3243817-3244022	A549	lung:	n/a	chr9:3243918-3243929
42	CEBPB	chr9:3258929-3259187	Hela-S3	cervix:	n/a	chr9:3259056-3259067
43	CEBPB	chr9:3306774-3307000	A549	lung:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
44	CEBPB	chr9:3306693-3307004	IMR90	lung:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306855 chr9:3306844-3306853
45	CEBPB	chr9:3261380-3261412	H1-hESC	embryonic stem cell:	n/a	n/a
46	CEBPB	chr9:3342171-3342606	IMR90	lung:	n/a	chr9:3342544-3342557 chr9:3342398-3342411
47	CEBPB	chr9:3257081-3257085	A549	lung:	n/a	n/a
48	CEBPB	chr9:3258978-3259229	A549	lung:	n/a	chr9:3259056-3259067
49	CEBPZ	chr9:3348455-3348469	HepG2	liver:	n/a	n/a
50	CHD2	chr9:3240676-3240963	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:3305273-3305323	MCF-7	breast:	n/a
2	chr9:3305273-3305323	PANC-1	pancreas:	n/a
3	chr9:3305273-3305323	PFSK-1	brain:	n/a
4	chr9:3305273-3305323	GM06990	blood:	n/a
5	chr9:3305273-3305323	CMK	blood:	n/a
6	chr9:3305273-3305323	AG09319	gingival:	n/a
7	chr9:3305273-3305323	RPTEC	kidney:	n/a
8	chr9:3305273-3305323	Hepatocyte	liver:	n/a
9	chr9:3305273-3305323	MCF10A-Er-Src	breast:	n/a
10	chr9:3305273-3305323	HMEC	breast:	n/a
11	chr9:3305273-3305323	ProgFib	skin:	n/a
12	chr9:3305273-3305323	SK-N-SH_RA	brain:	n/a
13	chr9:3305273-3305323	Jurkat	blood:	n/a
14	chr9:3305273-3305323	HIPEpiC	eye:	n/a
15	chr9:3305273-3305323	HNPCEpiC	eye:	n/a
16	chr9:3305273-3305323	HRCEpiC	kidney:	n/a
17	chr9:3305273-3305323	GM12891	blood:	n/a
18	chr9:3305273-3305323	HCPEpiC	choroid plexus:	n/a
19	chr9:3305273-3305323	NHDF-neo	bronchial:	n/a
20	chr9:3305273-3305323	HUVEC	blood vessel:	n/a
21	chr9:3305273-3305323	Caco-2	colon:	n/a
22	chr9:3305273-3305323	ovcar-3	ovarian:	n/a
23	chr9:3305273-3305323	AG04450	lung:	fetal
24	chr9:3305273-3305323	AoSMC	blood vessel:	n/a
25	chr9:3305273-3305323	HCF	heart:	n/a
26	chr9:3305273-3305323	HEK293	kidney:	embryo
27	chr9:3305273-3305323	HEEpiC	esophagus:	n/a
28	chr9:3305273-3305323	SK-N-MC	brain:	n/a
29	chr9:3305273-3305323	NT2-D1	testis:	n/a
30	chr9:3305273-3305323	PrEC	prostate:	n/a
31	chr9:3305273-3305323	SAEC	small airway:	n/a
32	chr9:3305273-3305323	GM12878	blood:	n/a
33	chr9:3305273-3305323	HRPEpiC	eye:	n/a
34	chr9:3305273-3305323	HAEpiC	amniotic membrane:	n/a
35	chr9:3305273-3305323	IMR90	lung:	fetal
36	chr9:3305273-3305323	SKMC	muscle:	n/a
37	chr9:3305273-3305323	HRE	kidney:	n/a
38	chr9:3305273-3305323	GM19239	blood:	n/a
39	chr9:3305273-3305323	HPAEpiC	pulmonary alveolar:	n/a
40	chr9:3305273-3305323	HCT-116	colon:	n/a
41	chr9:3305273-3305323	HL-60	blood:	n/a
42	chr9:3305273-3305323	Hela-S3	cervix:	n/a
43	chr9:3305273-3305323	BE2_C	brain:	n/a
44	chr9:3305273-3305323	BJ	skin:	n/a
45	chr9:3305273-3305323	HepG2	liver:	n/a
46	chr9:3305273-3305323	U87	brain:	n/a
47	chr9:3305273-3305323	HCM	heart:	n/a
48	chr9:3305273-3305323	T-47D	breast:	n/a
49	chr9:3305273-3305323	AG09309	skin:	n/a
50	chr9:3305273-3305323	ECC-1	luminal epithelium:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:3254757..3256417-chr9:3258277..3260050,2	K562	blood:
2	chr9:3331504..3332243-chr9:3512940..3513736,2	MCF-7	breast:
3	chr9:3239523..3241471-chr9:3244175..3245979,2	MCF-7	breast:
4	chr9:3308299..3310397-chr9:3310647..3312934,2	MCF-7	breast:
5	chr9:3240593..3241339-chr9:4375132..4375774,2	MCF-7	breast:
6	chr9:3326547..3328752-chr9:3332390..3333970,2	MCF-7	breast:
7	chr9:3240483..3241298-chr9:3440976..3441796,6	MCF-7	breast:
8	chr9:3218527..3221399-chr9:3268473..3270542,2	K562	blood:
9	chr9:3296136..3298871-chr9:3302065..3304976,2	K562	blood:
10	chr9:3308299..3310397-chr9:3310647..3312934,2	MCF-7	breast:
11	chr9:3326547..3328752-chr9:3332390..3333970,2	MCF-7	breast:
12	chr9:3263553..3265198-chr9:3266270..3268417,2	K562	blood:
13	chr9:3254757..3256417-chr9:3258277..3260050,2	K562	blood:
14	chr9:3239523..3241471-chr9:3244175..3245979,2	MCF-7	breast:
15	chr9:3263553..3265198-chr9:3266270..3268417,2	K562	blood:
16	chr9:3235405..3237128-chr9:3237566..3239202,2	MCF-7	breast:
17	chr9:3296136..3298871-chr9:3302065..3304976,2	K562	blood:

Variant related genes	Relation type
RFX3	TF binding region
RFX3	CpG island

Extended variants
information (count: 5199 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:5199 , 50 per page) page: 1 2 3 4 5 6 7 ... 104

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs613518	chr9:3237378-3237379	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs189531672	chr9:3237416-3237417	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs549418834	chr9:3237439-3237440	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs78946218	chr9:3237460-3237461	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs369554739	chr9:3237461-3237462	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs559746	chr9:3237494-3237495	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs574940793	chr9:3237510-3237511	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs181593694	chr9:3237518-3237519	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370921907	chr9:3237527-3237528	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs571331865	chr9:3237574-3237575	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs76840199	chr9:3237588-3237589	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs147759435	chr9:3237623-3237624	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs141150042	chr9:3237648-3237649	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs636595	chr9:3237658-3237659	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs78425071	chr9:3237669-3237670	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs575811270	chr9:3237706-3237707	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs186360948	chr9:3237712-3237713	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs190082119	chr9:3237732-3237733	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs181791419	chr9:3237760-3237761	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs573263922	chr9:3237784-3237785	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs369533550	chr9:3237787-3237788	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs74999231	chr9:3237791-3237792	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs637109	chr9:3237805-3237806	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs473778	chr9:3237814-3237815	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs186152605	chr9:3237823-3237824	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs536069509	chr9:3237831-3237832	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs111999914	chr9:3237883-3237884	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs551978499	chr9:3237887-3237888	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs832307	chr9:3237890-3237891	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs527342329	chr9:3237892-3237893	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547217355	chr9:3237907-3237908	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs567251687	chr9:3237937-3237938	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs138040255	chr9:3237972-3237973	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs372430485	chr9:3237973-3237974	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs202046340	chr9:3237991-3237992	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs200115577	chr9:3237993-3237994	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs549650831	chr9:3238006-3238007	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs182156657	chr9:3238040-3238041	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs538567745	chr9:3238052-3238053	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs147105376	chr9:3238061-3238062	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs151123972	chr9:3238062-3238063	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs554017618	chr9:3238080-3238081	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs12335835	chr9:3238081-3238082	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs543076574	chr9:3238085-3238086	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs1300076	chr9:3238090-3238091	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs34731895	chr9:3238100-3238101	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs576766013	chr9:3238114-3238115	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs185242235	chr9:3238115-3238116	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs530056719	chr9:3238116-3238117	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs141042129	chr9:3238150-3238151	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Gastric cancer	16715143	CNVD
Glioblastoma multiforme	22286061	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Myelofibrosis	22110671	CNVD
Developmental delay	21373258	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Ovarian cancer	22355333	CNVD
Autism	20808228	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Renal cell carcinoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1168 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3212000-3241000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:3217200-3245200	Weak transcription	Left Ventricle	heart
3	chr9:3220000-3256600	Weak transcription	Brain Anterior Caudate	brain
4	chr9:3220400-3287400	Weak transcription	Psoas Muscle	Psoas
5	chr9:3221200-3240800	Weak transcription	Fetal Kidney	kidney
6	chr9:3221400-3240800	Weak transcription	GM12878-XiMat	blood
7	chr9:3221600-3238600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:3221800-3251400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:3221800-3256400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:3222000-3237600	Weak transcription	NHLF	lung
11	chr9:3222000-3243800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:3222000-3246400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:3222000-3247800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:3222200-3244400	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:3222200-3244400	Weak transcription	Fetal Thymus	thymus
16	chr9:3222200-3256200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:3222200-3269400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:3222400-3247400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:3222400-3254800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:3223200-3246400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:3223200-3254800	Weak transcription	Brain Angular Gyrus	brain
22	chr9:3223200-3277000	Weak transcription	HSMMtube	muscle
23	chr9:3223400-3246000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr9:3223400-3270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:3223600-3243800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:3223600-3246400	Weak transcription	Fetal Intestine Large	intestine
27	chr9:3223600-3247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:3223600-3255400	Weak transcription	Right Ventricle	heart
29	chr9:3223600-3256600	Weak transcription	Thymus	Thymus
30	chr9:3223600-3264400	Weak transcription	Fetal Intestine Small	intestine
31	chr9:3223600-3271600	Weak transcription	Lung	lung
32	chr9:3223600-3284800	Weak transcription	Spleen	Spleen
33	chr9:3224000-3275800	Weak transcription	Gastric	stomach
34	chr9:3225200-3262800	Weak transcription	Esophagus	oesophagus
35	chr9:3225400-3240600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:3225400-3247800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:3225800-3255600	Weak transcription	Fetal Stomach	stomach
38	chr9:3226600-3289600	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:3226800-3246600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:3227400-3256600	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:3230000-3254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr9:3231400-3240400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:3232000-3253200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:3232000-3254600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr9:3232200-3246200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:3232400-3246400	Weak transcription	Adipose Nuclei	Adipose
47	chr9:3232400-3256400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr9:3232800-3240800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr9:3233600-3256400	Weak transcription	Brain Substantia Nigra	brain
50	chr9:3233600-3292600	Weak transcription	Pancreas	Pancrea

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