Variant report

Variant	nsv466264
Chromosome Location	chr9:16359608-16390629
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BNC2-1	chr9:16386793-16386928	NONHSAT130286
2	lnc-C9orf93-9	chr9:16388788-16388980	NONHSAT130287
3	lnc-BNC2-1	chr9:16381138-16381215	NONHSAT130286

Extended variants
information (count: 1262 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:1262 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10962392	chr9:16359608-16359609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs187795711	chr9:16359633-16359634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs78561190	chr9:16359645-16359646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550016971	chr9:16359655-16359656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs372959920	chr9:16359683-16359684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571618471	chr9:16359696-16359697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538615834	chr9:16359805-16359806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs193125340	chr9:16359806-16359807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553899401	chr9:16359839-16359840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535810773	chr9:16359877-16359878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs555374331	chr9:16359911-16359912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184892103	chr9:16359912-16359913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs377118888	chr9:16359938-16359939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189231163	chr9:16359941-16359942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs181626758	chr9:16359951-16359952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs184354050	chr9:16359958-16359959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs562730555	chr9:16359981-16359982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs4961710	chr9:16359984-16359985	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs534864719	chr9:16360031-16360032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117665724	chr9:16360036-16360037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs79314882	chr9:16360047-16360048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs76290632	chr9:16360067-16360068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs7032334	chr9:16360101-16360102	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs138138111	chr9:16360106-16360107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534983819	chr9:16360119-16360120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs367884766	chr9:16360120-16360121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs79707261	chr9:16360121-16360122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189663109	chr9:16360157-16360158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs143609855	chr9:16360203-16360204	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547751274	chr9:16360215-16360216	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565977147	chr9:16360239-16360240	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs536747567	chr9:16360289-16360290	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554718477	chr9:16360343-16360344	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs570172061	chr9:16360357-16360358	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538002416	chr9:16360361-16360362	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556422310	chr9:16360377-16360378	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs577987596	chr9:16360440-16360441	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs545015837	chr9:16360464-16360465	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs77974544	chr9:16360469-16360470	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181244563	chr9:16360498-16360499	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs73645951	chr9:16360499-16360500	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs560617858	chr9:16360536-16360537	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186070040	chr9:16360546-16360547	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs115986571	chr9:16360551-16360552	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565169666	chr9:16360556-16360557	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112090191	chr9:16360563-16360564	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs116304191	chr9:16360569-16360570	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141306914	chr9:16360600-16360601	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs10962393	chr9:16360621-16360622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs191018629	chr9:16360656-16360657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21611746	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:150 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16357800-16362000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:16359000-16360200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16359000-16376000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:16360200-16360600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:16360600-16363400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:16361000-16361800	Enhancers	Osteobl	bone
7	chr9:16361200-16361800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:16361800-16362000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:16362000-16362200	Enhancers	Left Ventricle	heart
10	chr9:16362000-16362800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:16362000-16367000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16362200-16362800	Enhancers	Brain Germinal Matrix	brain
13	chr9:16362200-16363000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:16362200-16365200	Weak transcription	Left Ventricle	heart
15	chr9:16362400-16363000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:16362600-16365600	Enhancers	HUVEC	blood vessel
17	chr9:16362800-16364200	Enhancers	Adipose Nuclei	Adipose
18	chr9:16362800-16364600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:16363000-16367600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:16363400-16363600	Enhancers	Fetal Stomach	stomach
21	chr9:16363400-16365400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:16363600-16363800	Enhancers	Lung	lung
23	chr9:16363600-16363800	Enhancers	Right Atrium	heart
24	chr9:16363600-16365000	Enhancers	Spleen	Spleen
25	chr9:16363800-16364600	Weak transcription	Right Atrium	heart
26	chr9:16363800-16365200	Weak transcription	Lung	lung
27	chr9:16364000-16365000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:16364200-16365200	Weak transcription	Adipose Nuclei	Adipose
29	chr9:16364400-16365000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:16364600-16364800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:16364600-16364800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr9:16364600-16364800	Enhancers	Fetal Stomach	stomach
33	chr9:16364600-16365400	Enhancers	Right Atrium	heart
34	chr9:16365000-16367600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:16365000-16367800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:16365200-16365400	Enhancers	Adipose Nuclei	Adipose
37	chr9:16365200-16365400	Enhancers	Left Ventricle	heart
38	chr9:16365200-16365600	Enhancers	Lung	lung
39	chr9:16365400-16367600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:16365600-16367600	Weak transcription	Lung	lung
41	chr9:16365600-16367600	Weak transcription	HUVEC	blood vessel
42	chr9:16366400-16366800	Enhancers	Thymus	Thymus
43	chr9:16366600-16366800	Enhancers	Fetal Thymus	thymus
44	chr9:16366800-16368000	Weak transcription	Thymus	Thymus
45	chr9:16367000-16368000	Weak transcription	Fetal Thymus	thymus
46	chr9:16367000-16368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:16367000-16369200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:16367000-16369200	Enhancers	NHDF-Ad	bronchial
49	chr9:16367000-16369800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:16367600-16367800	ZNF genes & repeats	Lung	lung

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