Variant report

Variant	nsv466297
Chromosome Location	chr9:21391698-21507589
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1887)
CpG islands
(count:305)
Chromatin interactive
region (count:10)
LncRNA
region (count:19)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1887 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:21396319-21396369	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:21461370-21461829	HepG2	liver:	n/a	n/a
3	ATF2	chr9:21444183-21444612	GM12878	blood:	n/a	n/a
4	ATF2	chr9:21444211-21444704	GM12878	blood:	n/a	n/a
5	BACH1	chr9:21415559-21415776	H1-hESC	embryonic stem cell:	n/a	chr9:21415684-21415698
6	BACH1	chr9:21396047-21396543	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL3	chr9:21503475-21506429	A549	lung:	n/a	chr9:21506204-21506213
8	BCL3	chr9:21499752-21501285	A549	lung:	n/a	n/a
9	BCL3	chr9:21499921-21500395	A549	lung:	n/a	n/a
10	BCL3	chr9:21506616-21507704	A549	lung:	n/a	n/a
11	BCL3	chr9:21500520-21501100	A549	lung:	n/a	n/a
12	BCL3	chr9:21501977-21502583	A549	lung:	n/a	n/a
13	BCL3	chr9:21498490-21499615	A549	lung:	n/a	n/a
14	BCL3	chr9:21501331-21508410	A549	lung:	n/a	chr9:21506204-21506213
15	BCLAF1	chr9:21396108-21396541	GM12878	blood:	n/a	n/a
16	BHLHE40	chr9:21404025-21404312	GM12878	blood:	n/a	n/a
17	BHLHE40	chr9:21396259-21396485	A549	lung:	n/a	n/a
18	BHLHE40	chr9:21396169-21396483	HepG2	liver:	n/a	n/a
19	BHLHE40	chr9:21395908-21396562	GM12878	blood:	n/a	n/a
20	BHLHE40	chr9:21444209-21444535	GM12878	blood:	n/a	n/a
21	BRCA1	chr9:21396248-21396483	GM12878	blood:	n/a	n/a
22	BRCA1	chr9:21396110-21396494	H1-hESC	embryonic stem cell:	n/a	n/a
23	CBX3	chr9:21465829-21466378	HCT-116	colon:	n/a	n/a
24	CEBPB	chr9:21506801-21507249	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr9:21478670-21478870	A549	lung:	n/a	chr9:21478675-21478688
26	CEBPB	chr9:21415765-21416076	A549	lung:	n/a	n/a
27	CEBPB	chr9:21450737-21451128	Hela-S3	cervix:	n/a	chr9:21450902-21450913
28	CEBPB	chr9:21455333-21455608	MCF-7	breast:	n/a	chr9:21455473-21455484
29	CEBPB	chr9:21455331-21455661	Hela-S3	cervix:	n/a	chr9:21455473-21455484
30	CEBPB	chr9:21450822-21451017	HepG2	liver:	n/a	chr9:21450902-21450913
31	CEBPB	chr9:21450783-21450983	H1-hESC	embryonic stem cell:	n/a	chr9:21450902-21450913
32	CEBPB	chr9:21454162-21454564	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr9:21506492-21507694	HCT-116	colon:	n/a	chr9:21507245-21507257
34	CEBPB	chr9:21506792-21507249	IMR90	lung:	n/a	n/a
35	CEBPB	chr9:21455421-21455617	HepG2	liver:	n/a	chr9:21455473-21455484
36	CEBPB	chr9:21422091-21422339	IMR90	lung:	n/a	n/a
37	CEBPB	chr9:21444379-21444606	IMR90	lung:	n/a	chr9:21444494-21444505
38	CEBPB	chr9:21444339-21444652	HepG2	liver:	n/a	chr9:21444494-21444505
39	CEBPB	chr9:21450742-21451060	IMR90	lung:	n/a	chr9:21450902-21450913
40	CEBPB	chr9:21495278-21495540	IMR90	lung:	n/a	n/a
41	CEBPB	chr9:21444352-21444627	A549	lung:	n/a	chr9:21444494-21444505
42	CEBPB	chr9:21495286-21495543	HepG2	liver:	n/a	n/a
43	CEBPB	chr9:21396167-21396488	H1-hESC	embryonic stem cell:	n/a	n/a
44	CEBPB	chr9:21461343-21461732	HepG2	liver:	n/a	chr9:21461511-21461522
45	CEBPB	chr9:21415312-21415515	IMR90	lung:	n/a	n/a
46	CEBPB	chr9:21493662-21493841	A549	lung:	n/a	n/a
47	CEBPB	chr9:21414300-21414550	A549	lung:	n/a	chr9:21414408-21414421 chr9:21414408-21414419 chr9:21414405-21414422
48	CEBPB	chr9:21455421-21455638	A549	lung:	n/a	chr9:21455473-21455484
49	CEBPB	chr9:21408084-21408246	H1-hESC	embryonic stem cell:	n/a	n/a
50	CEBPB	chr9:21495325-21495569	A549	lung:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:21396119-21396169	CMK	blood:	n/a
2	chr9:21396107-21396157	AoSMC	blood vessel:	n/a
3	chr9:21409505-21409555	HIPEpiC	eye:	n/a
4	chr9:21409505-21409555	HCF	heart:	n/a
5	chr9:21396119-21396169	PANC-1	pancreas:	n/a
6	chr9:21396119-21396169	NHBE	bronchial:	n/a
7	chr9:21409505-21409555	AG09309	skin:	n/a
8	chr9:21396078-21396128	BE2_C	brain:	n/a
9	chr9:21396119-21396169	ECC-1	luminal epithelium:	n/a
10	chr9:21396078-21396128	Jurkat	blood:	n/a
11	chr9:21409505-21409555	ProgFib	skin:	n/a
12	chr9:21396078-21396128	SAEC	small airway:	n/a
13	chr9:21396078-21396128	NHBE	bronchial:	n/a
14	chr9:21409505-21409555	ECC-1	luminal epithelium:	n/a
15	chr9:21396078-21396128	SK-N-SH_RA	brain:	n/a
16	chr9:21393116-21393166	HCPEpiC	choroid plexus:	n/a
17	chr9:21409505-21409555	NHDF-neo	bronchial:	n/a
18	chr9:21396119-21396169	A549	lung:	n/a
19	chr9:21396107-21396157	SAEC	small airway:	n/a
20	chr9:21393116-21393166	NHBE	bronchial:	n/a
21	chr9:21409505-21409555	SAEC	small airway:	n/a
22	chr9:21393116-21393166	Hepatocyte	liver:	n/a
23	chr9:21396119-21396169	ProgFib	skin:	n/a
24	chr9:21396078-21396128	GM06990	blood:	n/a
25	chr9:21396119-21396169	SKMC	muscle:	n/a
26	chr9:21396119-21396169	GM12878	blood:	n/a
27	chr9:21396078-21396128	GM12878	blood:	n/a
28	chr9:21409505-21409555	SK-N-SH_RA	brain:	n/a
29	chr9:21396107-21396157	K562	blood:	n/a
30	chr9:21409505-21409555	SKMC	muscle:	n/a
31	chr9:21409505-21409555	NT2-D1	testis:	n/a
32	chr9:21396119-21396169	ovcar-3	ovarian:	n/a
33	chr9:21393116-21393166	PrEC	prostate:	n/a
34	chr9:21393116-21393166	HCT-116	colon:	n/a
35	chr9:21396107-21396157	AG04449	skin:	fetal
36	chr9:21409505-21409555	RPTEC	kidney:	n/a
37	chr9:21409505-21409555	HCPEpiC	choroid plexus:	n/a
38	chr9:21396078-21396128	HNPCEpiC	eye:	n/a
39	chr9:21396119-21396169	BE2_C	brain:	n/a
40	chr9:21396107-21396157	CMK	blood:	n/a
41	chr9:21409505-21409555	HAEpiC	amniotic membrane:	n/a
42	chr9:21396107-21396157	AG04450	lung:	fetal
43	chr9:21393116-21393166	SK-N-SH_RA	brain:	n/a
44	chr9:21396107-21396157	GM12892	blood:	n/a
45	chr9:21393116-21393166	NH-A	brain:	n/a
46	chr9:21396119-21396169	AG04449	skin:	fetal
47	chr9:21396119-21396169	H1-hESC	embryonic stem cell:	embryo
48	chr9:21393116-21393166	CMK	blood:	n/a
49	chr9:21396107-21396157	RPTEC	kidney:	n/a
50	chr9:21393116-21393166	K562	blood:	n/a

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:21496297..21498448-chr9:21802383..21804700,2	MCF-7	breast:
2	chr9:21332702..21335919-chr9:21391741..21394424,4	MCF-7	breast:
3	chr9:21434162..21434698-chr9:21455012..21455833,2	MCF-7	breast:
4	chr9:21492643..21493283-chr9:21789425..21789929,2	MCF-7	breast:
5	chr9:21465480..21466871-chr9:21788898..21790282,6	MCF-7	breast:
6	chr9:21464451..21467378-chr9:21800569..21802345,2	MCF-7	breast:
7	chr17:56707046..56709120-chr9:21394171..21396091,2	MCF-7	breast:
8	chr9:21491433..21492444-chr9:21789127..21790263,7	MCF-7	breast:
9	chr9:21326559..21327137-chr9:21413703..21414313,2	MCF-7	breast:
10	chr9:21465639..21466595-chr9:21789434..21790168,4	MCF-7	breast:

(count:19 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFNE-1	chr9:21477168-21477291	NONHSAT130385
2	lnc-IFNE-1	chr9:21455641-21455943	ENSG00000171889
3	lnc-IFNA1-1	chr9:21455483-21456048	NONHSAT130387
4	lnc-IFNE-1	chr9:21476898-21477034	NONHSAT130388
5	lnc-IFNE-1	chr9:21454267-21455943	NONHSAT130386
6	lnc-IFNE-1	chr9:21476898-21477034	ENSG00000171889
7	lnc-IFNE-1	chr9:21477168-21477292	NONHSAT130389
8	lnc-IFNE-1	chr9:21476898-21477034	NONHSAT130386
9	lnc-IFNE-1	chr9:21454267-21455943	NONHSAT130385
10	lnc-IFNE-1	chr9:21477168-21477292	NONHSAT130388
11	lnc-IFNE-1	chr9:21476873-21477034	NONHSAT130389
12	lnc-IFNE-1	chr9:21477168-21477291	ENSG00000171889
13	lnc-IFNA2-2	chr9:21398613-21399138	NONHSAT130382
14	lnc-IFNE-1	chr9:21476898-21477034	NONHSAT130385
15	lnc-IFNA2-1	chr9:21394887-21396345	ENSG00000261696.1
16	lnc-IFNA8-1	chr9:21403080-21403650	NONHSAT130383
17	lnc-IFNE-1	chr9:21455587-21455943	NONHSAT130388
18	lnc-IFNE-1	chr9:21477168-21477291	NONHSAT130386
19	lnc-IFNA8-2	chr9:21420233-21420812	NONHSAT130384

No data

Variant related genes	Relation type
ENSG00000261696	TF binding region
IFNA12P	TF binding region
IFNWP2	TF binding region
IFNA8	TF binding region
IFNWP19	TF binding region
IFNA1	TF binding region
IFNA11P	TF binding region
IFNE	TF binding region
ENSG00000261696	CpG island
IFNA12P	CpG island
IFNWP2	CpG island
IFNA8	CpG island
IFNWP19	CpG island
IFNA1	CpG island
IFNA11P	CpG island
IFNE	CpG island
ENSG00000198642	chromatin interactions
ENSG00000099810	chromatin interactions
ENSG00000264545	chromatin interactions
ENSG00000238271	chromatin interactions
RPP40	miRNA target sites
RAB14	miRNA target sites
EEF1A1	miRNA target sites

Extended variants
information (count: 4201 )
Associated
traits (count: 161 )

Variant overlapped rSNPs/rCNVs (count:4201 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75165026	chr9:21391792-21391793	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs537717908	chr9:21391854-21391855	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs562990203	chr9:21391883-21391884	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs12339396	chr9:21391920-21391921	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs563307595	chr9:21391981-21391982	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs556398940	chr9:21392077-21392078	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs373153132	chr9:21392116-21392117	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs550510369	chr9:21392121-21392122	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs570679421	chr9:21392127-21392128	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs539349492	chr9:21392146-21392147	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs371305333	chr9:21392182-21392183	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs546525076	chr9:21392206-21392207	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs75850112	chr9:21392255-21392256	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs117721772	chr9:21392285-21392286	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs370959152	chr9:21392316-21392317	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs575255094	chr9:21392346-21392347	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs75607746	chr9:21392374-21392375	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs558069032	chr9:21392412-21392413	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs148113406	chr9:21392449-21392450	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs540910343	chr9:21392456-21392457	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs200843685	chr9:21392464-21392465	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs185497883	chr9:21392501-21392502	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs574052940	chr9:21392536-21392537	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs543057855	chr9:21392537-21392538	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs562928822	chr9:21392567-21392568	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs116634015	chr9:21392578-21392579	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs556128852	chr9:21392686-21392687	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs368028131	chr9:21392722-21392723	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs370373857	chr9:21392734-21392735	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs190706119	chr9:21392737-21392738	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs181520501	chr9:21392765-21392766	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs186115870	chr9:21392835-21392836	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs533180487	chr9:21392844-21392845	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs546461889	chr9:21392846-21392847	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs567655825	chr9:21392963-21392964	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs188507111	chr9:21392971-21392972	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs528819594	chr9:21393061-21393062	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs548573890	chr9:21393106-21393107	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs150657040	chr9:21393131-21393132	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs138901823	chr9:21393146-21393147	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs557866233	chr9:21393153-21393154	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs571724620	chr9:21393160-21393161	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs534413858	chr9:21393168-21393169	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs554469389	chr9:21393205-21393206	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs572455552	chr9:21393207-21393208	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs374423868	chr9:21393208-21393209	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs143239186	chr9:21393224-21393225	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs147531798	chr9:21393228-21393229	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs150847791	chr9:21393261-21393262	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs553101475	chr9:21393268-21393269	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:161)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21525872	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Breast cancer	21364760	CNVD
Cancer	20581869	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Oral cancer	22144094	CNVD
Lung cancer	21569311	CNVD
Epilepsy	20502679	CNVD
Barrett''s syndrome	19417022	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic cancer	17952125	CNVD
Chordoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chronic lymphocytic leukemia	21215367	CNVD
Renal cell carcinoma	21215367	CNVD
Ovarian cancer	21781307	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	16651412	CNVD

Chromatin state (count:1180 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21392800-21395800	Weak transcription	Gastric	stomach
2	chr9:21394200-21394400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:21395200-21395400	Bivalent Enhancer	NHLF	lung
4	chr9:21395600-21395800	Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr9:21395600-21395800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
6	chr9:21395600-21395800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:21395600-21395800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chr9:21395600-21396000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr9:21395600-21396600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:21395600-21396600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:21395800-21396000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:21395800-21396000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
13	chr9:21395800-21396000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr9:21395800-21396000	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr9:21395800-21396000	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:21395800-21396000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
17	chr9:21395800-21396000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:21395800-21396000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
19	chr9:21395800-21396000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:21395800-21396000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:21395800-21396000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:21395800-21396000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr9:21395800-21396000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:21395800-21396000	Active TSS	Brain Anterior Caudate	brain
25	chr9:21395800-21396000	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr9:21395800-21396000	Bivalent Enhancer	Fetal Intestine Large	intestine
27	chr9:21395800-21396000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
28	chr9:21395800-21396000	Bivalent Enhancer	Placenta	Placenta
29	chr9:21395800-21396000	Bivalent Enhancer	Fetal Thymus	thymus
30	chr9:21395800-21396000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr9:21395800-21396000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
32	chr9:21395800-21396000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
33	chr9:21395800-21396000	Bivalent Enhancer	Dnd41	blood
34	chr9:21395800-21396000	Bivalent Enhancer	HMEC	breast
35	chr9:21395800-21396200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr9:21395800-21396200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:21395800-21396200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr9:21395800-21396200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr9:21395800-21396200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
40	chr9:21395800-21396200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
41	chr9:21395800-21396200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
42	chr9:21395800-21396200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:21395800-21396200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
44	chr9:21395800-21396200	Active TSS	Aorta	Aorta
45	chr9:21395800-21396200	Bivalent/Poised TSS	Colonic Mucosa	Colon
46	chr9:21395800-21396200	Active TSS	Pancreas	Pancrea
47	chr9:21395800-21396200	Active TSS	Psoas Muscle	Psoas
48	chr9:21395800-21396200	Active TSS	Right Atrium	heart
49	chr9:21395800-21396200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
50	chr9:21395800-21396200	Active TSS	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links