Variant report

Variant	nsv466316
Chromosome Location	chr9:25562454-25598674
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 806 )
Associated
traits (count: 129 )

Variant overlapped rSNPs/rCNVs (count:806 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1412385	chr9:25562454-25562455	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs537677125	chr9:25562476-25562477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs77531251	chr9:25562511-25562512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189094863	chr9:25562512-25562513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs576145474	chr9:25562523-25562524	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs543585252	chr9:25562528-25562529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567122762	chr9:25562584-25562585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs561928067	chr9:25562623-25562624	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs140243117	chr9:25562662-25562663	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs541352178	chr9:25562719-25562720	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs537679009	chr9:25562734-25562735	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs560043492	chr9:25562740-25562741	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs527247008	chr9:25562741-25562742	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs373327280	chr9:25562754-25562755	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs2498738	chr9:25562784-25562785	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs570526488	chr9:25562788-25562789	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs531455967	chr9:25562793-25562794	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs571219134	chr9:25562815-25562816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs535494970	chr9:25562842-25562843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549929161	chr9:25562862-25562863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs568243263	chr9:25562870-25562871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs1537266	chr9:25562911-25562912	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs181038713	chr9:25562917-25562918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs76283188	chr9:25562919-25562920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150293966	chr9:25562921-25562922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553442934	chr9:25562935-25562936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112835428	chr9:25562938-25562939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs183862984	chr9:25562946-25562947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs73644505	chr9:25562960-25562961	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs543497631	chr9:25562968-25562969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs555481601	chr9:25562972-25562973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs137939884	chr9:25562984-25562985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541617580	chr9:25563031-25563032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572017736	chr9:25563046-25563047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559755709	chr9:25563066-25563067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533692970	chr9:25563071-25563072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs113912024	chr9:25563078-25563079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs564049683	chr9:25563114-25563115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531367540	chr9:25563164-25563165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549890172	chr9:25563178-25563179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs113089906	chr9:25563187-25563188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs578222993	chr9:25563189-25563190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529029773	chr9:25563216-25563217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547586709	chr9:25563256-25563257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372588176	chr9:25563257-25563258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188639766	chr9:25563276-25563277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181384272	chr9:25563282-25563283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569705792	chr9:25563303-25563304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369596404	chr9:25563327-25563328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543332983	chr9:25563348-25563349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:129)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Barrett''s syndrome	19417022	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25561800-25562800	Enhancers	Placenta	Placenta
2	chr9:25562200-25562600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:25562400-25563600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:25562800-25563600	Weak transcription	Placenta	Placenta
5	chr9:25563600-25563800	Enhancers	Placenta	Placenta
6	chr9:25563600-25564000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:25570800-25571200	Enhancers	Fetal Brain Female	brain
8	chr9:25570800-25571200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr9:25571000-25571400	Active TSS	Fetal Brain Male	brain
10	chr9:25576200-25577600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:25576800-25577400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:25577400-25578600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:25577600-25583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:25581800-25583000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:25583000-25584000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:25583000-25584600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:25584600-25585000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:25585000-25585800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:25585200-25585600	Active TSS	Psoas Muscle	Psoas
20	chr9:25585800-25590400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:25590400-25591000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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