Variant report

Variant	nsv466320
Chromosome Location	chr9:25610272-25643333
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:25613138..25615070-chr9:25677040..25679432,2	MCF-7	breast:
2	chr9:25612676..25613650-chr9:25715920..25716890,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFT74-4	chr9:25613547-25613770	XLOC_007305
2	lnc-IFT74-4	chr9:25617639-25617675	XLOC_007305

Variant related genes	Relation type
ENSG00000198680	chromatin interactions

Extended variants
information (count: 113 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111425124	chr9:25613153-25613154	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs556523301	chr9:25613166-25613167	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs538517947	chr9:25613196-25613197	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs74639374	chr9:25613205-25613206	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs535979639	chr9:25613236-25613237	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs568577314	chr9:25613328-25613329	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs554385393	chr9:25613458-25613459	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs572651294	chr9:25613477-25613478	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs74937497	chr9:25613532-25613533	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs564731941	chr9:25613564-25613565	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
11	rs191673829	chr9:25613581-25613582	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
12	rs576678883	chr9:25613598-25613599	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs146796085	chr9:25613603-25613604	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs35210851	chr9:25613638-25613639	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs562543771	chr9:25613645-25613646	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs529735418	chr9:25613651-25613652	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs547906145	chr9:25613726-25613727	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
18	rs184137014	chr9:25613755-25613756	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
19	rs527449446	chr9:25613763-25613764	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
20	rs140536919	chr9:25613772-25613773	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs570365396	chr9:25613789-25613790	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs188784752	chr9:25613802-25613803	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs549893024	chr9:25613826-25613827	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs568470149	chr9:25613870-25613871	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs562317555	chr9:25613889-25613890	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs535503886	chr9:25613903-25613904	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs554277021	chr9:25613988-25613989	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs115362569	chr9:25614033-25614034	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs78376401	chr9:25614040-25614041	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs181564112	chr9:25614056-25614057	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs187263535	chr9:25614076-25614077	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs11795244	chr9:25614128-25614129	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs150476487	chr9:25614165-25614166	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs547364447	chr9:25614173-25614174	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs72708974	chr9:25614193-25614194	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs80119164	chr9:25614228-25614229	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs559774607	chr9:25614231-25614232	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs7019397	chr9:25614409-25614410	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs545588654	chr9:25614434-25614435	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs564342500	chr9:25614449-25614450	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs531485055	chr9:25614452-25614453	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs550021445	chr9:25614480-25614481	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs190449737	chr9:25614631-25614632	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs376960680	chr9:25614661-25614662	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs138333919	chr9:25614664-25614665	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs547817950	chr9:25614667-25614668	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs376415112	chr9:25614744-25614745	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs372555070	chr9:25614745-25614746	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs201789199	chr9:25614752-25614753	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs13300960	chr9:25614765-25614766	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25613800-25614200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:25613800-25614200	Enhancers	NHEK	skin
3	chr9:25614000-25614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:25614000-25614400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:25634600-25635200	Enhancers	HUVEC	blood vessel
6	chr9:25636000-25636400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:25636200-25636400	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links