Variant report

Variant	nsv466331
Chromosome Location	chr9:26643035-26689442
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf82-3	chr9:26642695-26644593	NONHSAT130585

Extended variants
information (count: 1173 )
Associated
traits (count: 117 )

Variant overlapped rSNPs/rCNVs (count:1173 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11794586	chr9:26643035-26643036	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs573910305	chr9:26643036-26643037	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs185354253	chr9:26643058-26643059	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs553221548	chr9:26643184-26643185	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs577894032	chr9:26643202-26643203	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs545232399	chr9:26643223-26643224	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs147087452	chr9:26643227-26643228	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs190115698	chr9:26643286-26643287	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs76985127	chr9:26643324-26643325	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs561736558	chr9:26643331-26643332	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs181397675	chr9:26643332-26643333	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs186941783	chr9:26643350-26643351	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs559715332	chr9:26643440-26643441	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs556776614	chr9:26643462-26643463	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs533251692	chr9:26643512-26643513	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs376809073	chr9:26643513-26643514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs138554502	chr9:26643527-26643528	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs149267818	chr9:26643561-26643562	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs549173639	chr9:26643572-26643573	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs567673336	chr9:26643608-26643609	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs578126458	chr9:26643625-26643626	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs534725441	chr9:26643636-26643637	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs1434488	chr9:26643661-26643662	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs192283974	chr9:26643677-26643678	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs7874067	chr9:26643690-26643691	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs369559847	chr9:26643715-26643716	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs147974083	chr9:26643728-26643729	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs557535996	chr9:26643824-26643825	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs575710891	chr9:26643863-26643864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs141796452	chr9:26643892-26643893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs555143922	chr9:26643932-26643933	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs184012531	chr9:26643959-26643960	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs573661686	chr9:26643991-26643992	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs541065687	chr9:26644017-26644018	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs559384976	chr9:26644018-26644019	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs116675489	chr9:26644039-26644040	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs7848140	chr9:26644040-26644041	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs146017224	chr9:26644105-26644106	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs549139409	chr9:26644109-26644110	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs569861575	chr9:26644137-26644138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs567687439	chr9:26644144-26644145	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs187814904	chr9:26644235-26644236	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs374842603	chr9:26644242-26644243	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs201921684	chr9:26644288-26644289	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs190653668	chr9:26644326-26644327	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs182380703	chr9:26644341-26644342	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs139919693	chr9:26644371-26644372	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs565894677	chr9:26644380-26644381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs536476847	chr9:26644516-26644517	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs555132179	chr9:26644538-26644539	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:117)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
early-passage human iPS cells	21368824	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:217 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26649800-26650400	Enhancers	Brain Substantia Nigra	brain
2	chr9:26650200-26650800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:26656000-26656200	Enhancers	Brain Cingulate Gyrus	brain
4	chr9:26656000-26656400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:26656000-26656400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:26656000-26656400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:26656000-26656400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:26656000-26656400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr9:26656000-26656400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:26656000-26656400	Active TSS	Fetal Kidney	kidney
11	chr9:26656000-26656400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr9:26656000-26656400	Enhancers	Fetal Lung	lung
13	chr9:26656000-26656400	Active TSS	A549	lung
14	chr9:26656000-26656400	Enhancers	Osteobl	bone
15	chr9:26656000-26656800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:26656000-26656800	Enhancers	Fetal Muscle Leg	muscle
17	chr9:26656200-26656400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:26656200-26656400	Enhancers	Brain Angular Gyrus	brain
19	chr9:26656200-26656400	Flanking Active TSS	Brain Cingulate Gyrus	brain
20	chr9:26656200-26656400	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr9:26656200-26656400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr9:26656200-26656400	Flanking Active TSS	HMEC	breast
23	chr9:26656200-26656800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:26656200-26656800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:26656200-26657200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:26656200-26659600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:26656400-26656600	Active TSS	HMEC	breast
28	chr9:26656400-26656800	Enhancers	Brain Hippocampus Middle	brain
29	chr9:26656600-26657000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:26656600-26658000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:26656600-26658000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:26657200-26657600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:26657400-26658000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:26657600-26659600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr9:26658200-26659400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:26659000-26659600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:26665800-26666000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:26665800-26666000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:26665800-26666000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:26666000-26667800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:26666000-26668000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:26666200-26668000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:26667400-26670800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:26667600-26673000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr9:26667800-26668000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:26667800-26668200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:26667800-26670000	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr9:26667800-26670600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:26668000-26668200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:26668000-26669800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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