Variant report

Variant	nsv466456
Chromosome Location	chr9:105956923-105979224
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:74559597..74561112-chr9:105966073..105968012,2	MCF-7	breast:
2	chr9:105976143..105978580-chr9:106020426..106022404,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR13C4-4	chr9:105969455-105969725	ENSG00000225564.2
2	lnc-CYLC2-4	chr9:105967406-105967836	NONHSAT133773
3	lnc-CYLC2-4	chr9:105964980-105965018	NONHSAT133773
4	lnc-CYLC2-4	chr9:105968111-105968844	NONHSAT133773
5	lnc-CYLC2-4	chr9:105966669-105967391	NONHSAT133773

No data

Extended variants
information (count: 224 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:224 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9722550	chr9:105964984-105964985	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs556315372	chr9:105966001-105966002	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs377766716	chr9:105966006-105966007	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs576458670	chr9:105966071-105966072	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs545141613	chr9:105966119-105966120	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs142666074	chr9:105966188-105966189	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs79017991	chr9:105966199-105966200	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs540875046	chr9:105966212-105966213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs138685878	chr9:105966235-105966236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529979252	chr9:105966238-105966239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs543385868	chr9:105966251-105966252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs563112579	chr9:105966292-105966293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs532150879	chr9:105966309-105966310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs552264703	chr9:105966315-105966316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs371198919	chr9:105966382-105966383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs10990620	chr9:105966398-105966399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374715167	chr9:105966400-105966401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376766079	chr9:105966405-105966406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71499525	chr9:105966408-105966409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs77809982	chr9:105966416-105966417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs199585405	chr9:105966419-105966420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs141096562	chr9:105966420-105966421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs191225702	chr9:105966470-105966471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs146959098	chr9:105966475-105966476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567931794	chr9:105966529-105966530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536570302	chr9:105966563-105966564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190516137	chr9:105966613-105966614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111459984	chr9:105966614-105966615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556837941	chr9:105966682-105966683	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs374986874	chr9:105966787-105966788	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs569914851	chr9:105966816-105966817	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs4082127	chr9:105966846-105966847	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs7590	chr9:105966928-105966929	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs1530702	chr9:105966934-105966935	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs540813579	chr9:105966954-105966955	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs141878974	chr9:105967001-105967002	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs574599296	chr9:105967092-105967093	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs543319225	chr9:105967095-105967096	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs563612356	chr9:105967112-105967113	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs1062252	chr9:105967149-105967150	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs2166930	chr9:105967162-105967163	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs545858519	chr9:105967164-105967165	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs559478866	chr9:105967179-105967180	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs528228727	chr9:105967206-105967207	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs200512820	chr9:105967207-105967208	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs111673696	chr9:105967218-105967219	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs182967923	chr9:105967231-105967232	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs529861031	chr9:105967234-105967235	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs140032433	chr9:105967260-105967261	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs115647825	chr9:105967268-105967269	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105966000-105966200	Active TSS	Aorta	Aorta
2	chr9:105966200-105970600	Weak transcription	Aorta	Aorta
3	chr9:105970600-105970800	Enhancers	Aorta	Aorta

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