Variant report

Variant	nsv467199
Chromosome Location	chr10:53864402-53948854
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:53905345..53907356-chr10:54205524..54208518,2	MCF-7	breast:
2	chr10:53906856..53908912-chr10:53910434..53911950,2	K562	blood:
3	chr10:53920148..53922306-chr10:53923246..53925230,2	MCF-7	breast:
4	chr10:53864883..53865551-chr10:53975440..53976171,2	MCF-7	breast:
5	chr10:53871608..53873718-chr10:53877748..53879597,2	K562	blood:
6	chr10:53864580..53866365-chr10:53866545..53868550,2	K562	blood:
7	chr10:53871608..53873718-chr10:53877748..53879597,2	K562	blood:
8	chr10:53920148..53922306-chr10:53923246..53925230,2	MCF-7	breast:
9	chr10:53876823..53879569-chr5:4880491..4883290,2	MCF-7	breast:
10	chr10:53906856..53908912-chr10:53910434..53911950,2	K562	blood:
11	chr10:53897685..53900097-chr10:53900514..53902494,2	MCF-7	breast:
12	chr10:53864580..53866365-chr10:53866545..53868550,2	K562	blood:
13	chr10:53897685..53900097-chr10:53900514..53902494,2	MCF-7	breast:
14	chr10:53897844..53898554-chr9:136583587..136584561,2	MCF-7	breast:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CSTF2T-2	chr10:53893034-53893098	NONHSAT013415
2	lnc-CSTF2T-2	chr10:53881080-53881283	NONHSAT013415
3	lnc-CSTF2T-2	chr10:53880644-53881283	ucscGeneNc_uc001jjs_2
4	lnc-CSTF2T-2	chr10:53884352-53884515	NONHSAT013415
5	lnc-CSTF2T-2	chr10:53884872-53885038	NONHSAT013414
6	lnc-DKK1-2	chr10:53938114-53939568	NONHSAT013416
7	lnc-CSTF2T-2	chr10:53900163-53900299	NONHSAT013415
8	lnc-CSTF2T-2	chr10:53884352-53884515	NONHSAT013414
9	lnc-CSTF2T-2	chr10:53884872-53885038	ucscGeneNc_uc001jjs_2
10	lnc-CSTF2T-2	chr10:53884352-53884515	ucscGeneNc_uc001jjs_2
11	lnc-CSTF2T-2	chr10:53880643-53881283	NONHSAT013414

No data

Extended variants
information (count: 3385 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:3385 , 50 per page) page: 1 2 3 4 5 6 7 ... 68

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11000792	chr10:53864402-53864403	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs559646517	chr10:53864414-53864415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs558512700	chr10:53864445-53864446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs575276060	chr10:53864523-53864524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs573084727	chr10:53864555-53864556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs371698921	chr10:53864646-53864647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372659600	chr10:53864672-53864673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369920070	chr10:53864677-53864678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs575050791	chr10:53864689-53864690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs193013056	chr10:53864707-53864708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs150897004	chr10:53864789-53864790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139418033	chr10:53864802-53864803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577463980	chr10:53864807-53864808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184247973	chr10:53864812-53864813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562886693	chr10:53864818-53864819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs188539562	chr10:53864856-53864857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs71898392	chr10:53864876-53864877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548251147	chr10:53864914-53864915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562206663	chr10:53864951-53864952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200638249	chr10:53864967-53864968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546496413	chr10:53864972-53864973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs191559463	chr10:53864976-53864977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs114911147	chr10:53864993-53864994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs149979012	chr10:53864994-53864995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568805754	chr10:53865057-53865058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs183701005	chr10:53865061-53865062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs116829494	chr10:53865093-53865094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568672989	chr10:53865098-53865099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534441525	chr10:53865148-53865149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs190827915	chr10:53865162-53865163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs186784127	chr10:53865177-53865178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs114966873	chr10:53865182-53865183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78326059	chr10:53865195-53865196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs556307064	chr10:53865248-53865249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs535760111	chr10:53865266-53865267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs182070771	chr10:53865279-53865280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77072933	chr10:53865325-53865326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs541932595	chr10:53865329-53865330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561802421	chr10:53865360-53865361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76144963	chr10:53865364-53865365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs187221010	chr10:53865366-53865367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs369234348	chr10:53865395-53865396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374989742	chr10:53865403-53865404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs143736795	chr10:53865406-53865407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372538655	chr10:53865426-53865427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs146818599	chr10:53865431-53865432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs190003037	chr10:53865457-53865458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113804801	chr10:53865485-53865486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181450939	chr10:53865490-53865491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs185546719	chr10:53865491-53865492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD

Chromatin state (count:226 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53854800-53866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:53856400-53866200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:53860000-53865600	Weak transcription	Aorta	Aorta
4	chr10:53862200-53866600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:53865800-53867000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:53865800-53869600	Weak transcription	Aorta	Aorta
7	chr10:53866000-53870200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:53866200-53867000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr10:53866600-53867000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr10:53866600-53867000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:53866600-53867000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:53866600-53867200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:53866600-53867400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:53867000-53869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:53867000-53872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:53867200-53869600	Weak transcription	Psoas Muscle	Psoas
17	chr10:53869600-53869800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:53869600-53870000	Enhancers	Psoas Muscle	Psoas
19	chr10:53869800-53870200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:53870000-53875200	Weak transcription	Psoas Muscle	Psoas
21	chr10:53870200-53870400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:53870200-53870800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr10:53870200-53872000	Enhancers	Fetal Lung	lung
24	chr10:53870400-53870800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr10:53870800-53871200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:53870800-53872200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:53871200-53876400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:53872200-53877000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:53872400-53873000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:53873000-53876600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:53873600-53874000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:53875200-53875600	Enhancers	Aorta	Aorta
33	chr10:53875200-53876000	Enhancers	Psoas Muscle	Psoas
34	chr10:53875400-53876000	Enhancers	Placenta	Placenta
35	chr10:53875400-53876000	Enhancers	HUVEC	blood vessel
36	chr10:53875400-53876800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr10:53875600-53877000	Weak transcription	Aorta	Aorta
38	chr10:53876000-53877000	Weak transcription	Psoas Muscle	Psoas
39	chr10:53876000-53880400	Weak transcription	Placenta	Placenta
40	chr10:53876400-53877400	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:53876800-53878800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr10:53877000-53877200	Enhancers	Aorta	Aorta
43	chr10:53877000-53877200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:53877000-53877400	Enhancers	Psoas Muscle	Psoas
45	chr10:53877200-53880400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:53877200-53880800	Weak transcription	Aorta	Aorta
47	chr10:53877400-53880400	Weak transcription	Psoas Muscle	Psoas
48	chr10:53877400-53880600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:53878800-53881600	Enhancers	Placenta Amnion	Placenta Amnion
50	chr10:53879000-53879800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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