Variant report

Variant	nsv467666
Chromosome Location	chr11:4815348-4917089
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:453)
CpG islands
(count:976)
Chromatin interactive
region (count:27)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:453 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:4913300-4913638	K562	blood:	n/a	n/a
2	ATF1	chr11:4913304-4913529	K562	blood:	n/a	n/a
3	ATF1	chr11:4911544-4911839	K562	blood:	n/a	n/a
4	ATF1	chr11:4903288-4903949	K562	blood:	n/a	n/a
5	BACH1	chr11:4903312-4903361	K562	blood:	n/a	n/a
6	BHLHE40	chr11:4903370-4903912	K562	blood:	n/a	n/a
7	CBX3	chr11:4903266-4903716	K562	blood:	n/a	n/a
8	CCNT2	chr11:4903333-4904063	K562	blood:	n/a	n/a
9	CEBPB	chr11:4884811-4885319	HepG2	liver:	n/a	chr11:4884971-4884982 chr11:4884971-4884984
10	CEBPB	chr11:4911483-4911973	K562	blood:	n/a	chr11:4911686-4911697
11	CEBPB	chr11:4847987-4848334	HepG2	liver:	n/a	chr11:4848050-4848061
12	CEBPB	chr11:4911521-4911838	H1-hESC	embryonic stem cell:	n/a	chr11:4911686-4911697
13	CEBPB	chr11:4903137-4903989	K562	blood:	n/a	n/a
14	CEBPB	chr11:4845391-4845677	A549	lung:	n/a	chr11:4845553-4845564
15	CEBPB	chr11:4911505-4911882	IMR90	lung:	n/a	chr11:4911686-4911697
16	CEBPB	chr11:4845401-4845737	IMR90	lung:	n/a	chr11:4845553-4845564
17	CEBPB	chr11:4911442-4911869	K562	blood:	n/a	chr11:4911686-4911697
18	CEBPB	chr11:4903325-4903673	K562	blood:	n/a	n/a
19	CEBPB	chr11:4848087-4848331	A549	lung:	n/a	n/a
20	CEBPB	chr11:4845499-4845699	K562	blood:	n/a	chr11:4845553-4845564
21	CEBPB	chr11:4845429-4845720	HepG2	liver:	n/a	chr11:4845553-4845564
22	CEBPB	chr11:4815769-4815953	K562	blood:	n/a	n/a
23	CEBPB	chr11:4847965-4848232	K562	blood:	n/a	chr11:4848050-4848061
24	CEBPB	chr11:4911556-4911850	A549	lung:	n/a	chr11:4911686-4911697
25	CEBPB	chr11:4911534-4911870	Hela-S3	cervix:	n/a	chr11:4911686-4911697
26	CEBPB	chr11:4911502-4911872	HepG2	liver:	n/a	chr11:4911686-4911697
27	CEBPB	chr11:4884835-4885128	A549	lung:	n/a	chr11:4884971-4884982 chr11:4884971-4884984
28	CEBPB	chr11:4884836-4885140	H1-hESC	embryonic stem cell:	n/a	chr11:4884971-4884982 chr11:4884971-4884984
29	CEBPB	chr11:4903071-4903449	IMR90	lung:	n/a	n/a
30	CEBPB	chr11:4911375-4911976	K562	blood:	n/a	chr11:4911686-4911697
31	CEBPD	chr11:4911488-4911858	K562	blood:	n/a	n/a
32	CEBPD	chr11:4911480-4911976	K562	blood:	n/a	n/a
33	CEBPD	chr11:4903295-4903815	K562	blood:	n/a	n/a
34	CEBPD	chr11:4903302-4904220	K562	blood:	n/a	n/a
35	CHD2	chr11:4846254-4846282	K562	blood:	n/a	n/a
36	CTCF	chr11:4861240-4861390	GM12873	blood:	n/a	n/a
37	CTCF	chr11:4870257-4870381	K562	blood:	n/a	n/a
38	CTCF	chr11:4847702-4848108	IMR90	lung:	n/a	n/a
39	CTCF	chr11:4913600-4913750	HPAF	blood vessel:	n/a	n/a
40	CTCF	chr11:4847880-4847956	MCF-7	breast:	n/a	n/a
41	CTCF	chr11:4847834-4847989	Gliobla	brain:	n/a	n/a
42	CTCF	chr11:4847792-4847979	K562	blood:	n/a	n/a
43	CTCF	chr11:4913500-4913650	GM12872	blood:	n/a	n/a
44	CTCF	chr11:4913600-4913750	HCT-116	colon:	n/a	n/a
45	CTCF	chr11:4913580-4913730	GM12871	blood:	n/a	n/a
46	CTCF	chr11:4847760-4847910	HMF	breast:	n/a	n/a
47	CTCF	chr11:4870320-4870470	K562	blood:	n/a	n/a
48	CTCF	chr11:4847820-4847970	HCPEpiC	choroid plexus:	n/a	n/a
49	CTCF	chr11:4913500-4913650	HCPEpiC	choroid plexus:	n/a	n/a
50	CTCF	chr11:4913600-4913750	SAEC	small airway:	n/a	n/a

(count:976 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:4841204-4841254	HNPCEpiC	eye:	n/a
2	chr11:4870255-4870305	A549	lung:	n/a
3	chr11:4902491-4902541	PANC-1	pancreas:	n/a
4	chr11:4825640-4825690	PFSK-1	brain:	n/a
5	chr11:4903155-4903205	Hela-S3	cervix:	n/a
6	chr11:4843021-4843071	MCF10A-Er-Src	breast:	n/a
7	chr11:4842355-4842405	ECC-1	luminal epithelium:	n/a
8	chr11:4902464-4902514	HL-60	blood:	n/a
9	chr11:4825815-4825865	AG09319	gingival:	n/a
10	chr11:4825815-4825865	SK-N-SH	brain:	n/a
11	chr11:4825232-4825282	HIPEpiC	eye:	n/a
12	chr11:4870255-4870305	HCT-116	colon:	n/a
13	chr11:4825640-4825690	SK-N-SH	brain:	n/a
14	chr11:4870255-4870305	AG10803	skin:	n/a
15	chr11:4870255-4870305	CMK	blood:	n/a
16	chr11:4902583-4902633	HCM	heart:	n/a
17	chr11:4902491-4902541	HMEC	breast:	n/a
18	chr11:4871411-4871461	Hepatocyte	liver:	n/a
19	chr11:4843021-4843071	NH-A	brain:	n/a
20	chr11:4825232-4825282	HCPEpiC	choroid plexus:	n/a
21	chr11:4871813-4871863	PANC-1	pancreas:	n/a
22	chr11:4870255-4870305	HAEpiC	amniotic membrane:	n/a
23	chr11:4825815-4825865	GM12892	blood:	n/a
24	chr11:4825815-4825865	HRPEpiC	eye:	n/a
25	chr11:4843021-4843071	ovcar-3	ovarian:	n/a
26	chr11:4824704-4824754	HCPEpiC	choroid plexus:	n/a
27	chr11:4870453-4870503	K562	blood:	n/a
28	chr11:4841204-4841254	A549	lung:	n/a
29	chr11:4841204-4841254	HRPEpiC	eye:	n/a
30	chr11:4903155-4903205	LNCaP	prostate:	n/a
31	chr11:4870255-4870305	NT2-D1	testis:	n/a
32	chr11:4842355-4842405	SAEC	small airway:	n/a
33	chr11:4825815-4825865	SKMC	muscle:	n/a
34	chr11:4825640-4825690	HCPEpiC	choroid plexus:	n/a
35	chr11:4871813-4871863	NT2-D1	testis:	n/a
36	chr11:4870453-4870503	IMR90	lung:	fetal
37	chr11:4902464-4902514	Hela-S3	cervix:	n/a
38	chr11:4870453-4870503	HCF	heart:	n/a
39	chr11:4843021-4843071	AG09319	gingival:	n/a
40	chr11:4842355-4842405	AG10803	skin:	n/a
41	chr11:4825815-4825865	AG04449	skin:	fetal
42	chr11:4825815-4825865	BE2_C	brain:	n/a
43	chr11:4871813-4871863	SK-N-MC	brain:	n/a
44	chr11:4903155-4903205	T-47D	breast:	n/a
45	chr11:4871411-4871461	Caco-2	colon:	n/a
46	chr11:4869963-4870013	SK-N-SH	brain:	n/a
47	chr11:4843021-4843071	AG04450	lung:	fetal
48	chr11:4871813-4871863	SK-N-SH	brain:	n/a
49	chr11:4902583-4902633	AG04450	lung:	fetal
50	chr11:4871813-4871863	GM12891	blood:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:4912456..4914892-chr11:4916437..4919051,2	K562	blood:
2	11:4820112-4824892..11:5527719-5533869	H1-hESC	embryonic stem cell:	embryo
3	chr11:4887759..4889897-chr11:4893466..4895197,2	K562	blood:
4	chr11:4822926..4825841-chr11:4830287..4832476,2	K562	blood:
5	11:4869840-4870943..11:4870943-4872364	Hela-S3	cervix:
6	11:4801044-4820112..11:5700314-5707362	H1-hESC	embryonic stem cell:	embryo
7	chr11:4912456..4914892-chr11:4916437..4919051,2	K562	blood:
8	11:4886992-4893242..11:5700314-5707362	Hela-S3	cervix:
9	chr11:4894111..4896171-chr11:4899276..4901453,2	K562	blood:
10	chr11:4887759..4889897-chr11:4893466..4895197,2	K562	blood:
11	11:4820112-4824892..11:5018576-5020673	H1-hESC	embryonic stem cell:	embryo
12	11:4849537-4851766..11:5527719-5533869	H1-hESC	embryonic stem cell:	embryo
13	chr11:4899835..4902548-chr11:4904411..4907145,2	K562	blood:
14	chr11:4855919..4858881-chr11:4862668..4864924,2	MCF-7	breast:
15	chr11:4899835..4902548-chr11:4904411..4907145,2	K562	blood:
16	chr11:4855919..4858881-chr11:4862668..4864924,2	MCF-7	breast:
17	chr11:4884965..4887784-chr11:4890382..4892090,2	K562	blood:
18	chr11:4817686..4819750-chr11:4821906..4823690,2	K562	blood:
19	chr11:4822926..4825696-chr11:4829994..4831787,2	K562	blood:
20	chr11:4657833..4658473-chr11:4847439..4848013,2	MCF-7	breast:
21	chr11:4817686..4819750-chr11:4821906..4823690,2	K562	blood:
22	chr11:4894111..4896171-chr11:4899276..4901453,2	K562	blood:
23	11:4820112-4824892..11:5721056-5732713	H1-hESC	embryonic stem cell:	embryo
24	11:4820112-4824892..11:5700314-5707362	K562	blood:
25	11:4886992-4893242..11:5721056-5732713	K562	blood:
26	11:4886992-4893242..11:5714465-5718134	K562	blood:
27	chr11:4884965..4887784-chr11:4890382..4892090,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR52R1-1	chr11:4816146-4816514	NONHSAT017656
2	lnc-OR52R1-1	chr11:4815008-4815466	NONHSAT017656

No data

Variant related genes	Relation type
OR51S1	TF binding region
OR52R1	TF binding region
OR51A8P	TF binding region
OR51T1	TF binding region
OR51H1P	TF binding region
OR51F2	TF binding region
OR52Y1P	TF binding region
OR51A6P	TF binding region
OR51H2P	TF binding region
OR51S1	CpG island
OR52R1	CpG island
OR51A8P	CpG island
OR51T1	CpG island
OR51H1P	CpG island
OR51F2	CpG island
OR52Y1P	CpG island
OR51A6P	CpG island
OR51H2P	CpG island
ENSG00000176798	chromatin interactions
ENSG00000176937	chromatin interactions
ENSG00000175520	chromatin interactions
ENSG00000132274	chromatin interactions
ENSG00000132256	chromatin interactions
ENSG00000176922	chromatin interactions

Extended variants
information (count: 2075 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:2075 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10768242	chr11:4815348-4815349	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs530072666	chr11:4815349-4815350	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
3	rs151267702	chr11:4815413-4815414	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
4	rs527663116	chr11:4815432-4815433	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
5	rs570372955	chr11:4815438-4815439	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
6	rs547803705	chr11:4815449-4815450	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
7	rs201351621	chr11:4815462-4815463	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
8	rs386750056	chr11:4815463-4815464	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
9	rs35419998	chr11:4815464-4815465	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
10	rs191275364	chr11:4815486-4815487	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs534433065	chr11:4815492-4815493	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs183858522	chr11:4815515-4815516	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs188952063	chr11:4815564-4815565	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs201485301	chr11:4815574-4815575	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs139153720	chr11:4815589-4815590	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs541471985	chr11:4815611-4815612	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs566248224	chr11:4815685-4815686	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs77446995	chr11:4815694-4815695	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs149926265	chr11:4815697-4815698	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs73401060	chr11:4815743-4815744	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs564330524	chr11:4815744-4815745	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs528245267	chr11:4815772-4815773	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs567652608	chr11:4815833-4815834	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs370052765	chr11:4815844-4815845	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs377712647	chr11:4815846-4815847	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs559924295	chr11:4815912-4815913	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs530212703	chr11:4815929-4815930	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs115420876	chr11:4815933-4815934	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs569933284	chr11:4815934-4815935	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs75672508	chr11:4815949-4815950	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs368541109	chr11:4815970-4815971	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs115103854	chr11:4815972-4815973	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs73401061	chr11:4816003-4816004	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs533180936	chr11:4816019-4816020	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs573962549	chr11:4816020-4816021	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs534927670	chr11:4816021-4816022	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs78933009	chr11:4816052-4816053	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs567844222	chr11:4816056-4816057	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs114756938	chr11:4816082-4816083	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs556934234	chr11:4816106-4816107	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs575105519	chr11:4816107-4816108	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs16905773	chr11:4816114-4816115	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs558041406	chr11:4816157-4816158	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs573163034	chr11:4816175-4816176	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs12282558	chr11:4816193-4816194	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs561841526	chr11:4816207-4816208	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs575020006	chr11:4816212-4816213	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs375640781	chr11:4816238-4816239	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs16905789	chr11:4816242-4816243	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs563722509	chr11:4816256-4816257	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22522925	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4815400-4816200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:4815800-4816000	Enhancers	Small Intestine	intestine
3	chr11:4816200-4820200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:4816400-4816600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:4816400-4816800	Enhancers	Gastric	stomach
6	chr11:4816800-4817000	Weak transcription	Gastric	stomach
7	chr11:4817000-4817400	Enhancers	Gastric	stomach
8	chr11:4817200-4817400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:4817400-4821200	Weak transcription	Gastric	stomach
10	chr11:4817600-4817800	Enhancers	Stomach Mucosa	stomach
11	chr11:4818000-4818800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr11:4818600-4818800	Enhancers	Stomach Mucosa	stomach
13	chr11:4820200-4820400	Enhancers	Stomach Mucosa	stomach
14	chr11:4820200-4821000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:4821200-4821600	Enhancers	Gastric	stomach
16	chr11:4821600-4825000	Weak transcription	Gastric	stomach
17	chr11:4824000-4826600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:4825000-4825200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:4825000-4825200	Enhancers	Spleen	Spleen
20	chr11:4825000-4825400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
21	chr11:4825000-4825400	Active TSS	Gastric	stomach
22	chr11:4840200-4842000	Enhancers	NHDF-Ad	bronchial
23	chr11:4840400-4842400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:4840600-4842000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:4840600-4842000	Enhancers	NHEK	skin
26	chr11:4841000-4842000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:4841000-4842000	Enhancers	HMEC	breast
28	chr11:4841000-4842200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:4842600-4843000	Active TSS	Brain Substantia Nigra	brain
30	chr11:4843000-4843200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
31	chr11:4844800-4846200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:4845200-4846400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:4852000-4852600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:4856600-4857000	Enhancers	Rectal Smooth Muscle	rectum
35	chr11:4861400-4861800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:4863600-4863800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:4870000-4870400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:4870000-4870600	Enhancers	Gastric	stomach
39	chr11:4870200-4870800	Enhancers	Liver	Liver
40	chr11:4870400-4871600	Enhancers	Fetal Heart	heart
41	chr11:4870800-4872200	Weak transcription	Liver	Liver
42	chr11:4871600-4872400	Weak transcription	Fetal Heart	heart
43	chr11:4872200-4872600	Enhancers	Liver	Liver
44	chr11:4872200-4872600	Enhancers	Right Ventricle	heart
45	chr11:4872400-4872600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:4872400-4872600	Enhancers	Esophagus	oesophagus
47	chr11:4872400-4872600	Enhancers	Fetal Heart	heart
48	chr11:4872400-4872600	Enhancers	Gastric	stomach
49	chr11:4872400-4872600	Enhancers	Lung	lung
50	chr11:4881000-4881200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links