Variant report

Variant	nsv469810
Chromosome Location	chr1:196669510-196816371
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:196712502-196712701	K562	blood:	n/a	n/a
2	ATF1	chr1:196688114-196688182	K562	blood:	n/a	n/a
3	ATF1	chr1:196677817-196677904	K562	blood:	n/a	n/a
4	BATF	chr1:196743800-196744098	GM12878	blood:	n/a	chr1:196743977-196743985
5	CBX3	chr1:196707919-196708187	K562	blood:	n/a	n/a
6	CBX3	chr1:196707787-196708233	K562	blood:	n/a	n/a
7	CEBPB	chr1:196792658-196792868	A549	lung:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792826-196792839 chr1:196792697-196792706
8	CEBPB	chr1:196792584-196792829	HepG2	liver:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792697-196792706
9	CEBPB	chr1:196792559-196792845	IMR90	lung:	n/a	chr1:196792695-196792706 chr1:196792696-196792707 chr1:196792695-196792708 chr1:196792826-196792839 chr1:196792697-196792706
10	CEBPB	chr1:196745101-196745132	IMR90	lung:	n/a	n/a
11	CTCF	chr1:196692525-196692763	Pancreas_OC	pancreas:	n/a	n/a
12	CTCF	chr1:196692580-196692730	HRE	kidney:	n/a	n/a
13	CTCF	chr1:196712500-196712650	HPAF	blood vessel:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
14	CTCF	chr1:196692560-196692710	GM12869	blood:	n/a	n/a
15	CTCF	chr1:196692560-196692710	HFF	foreskin:	n/a	n/a
16	CTCF	chr1:196797060-196797210	HEEpiC	esophagus:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
17	CTCF	chr1:196712520-196712670	GM06990	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
18	CTCF	chr1:196797036-196797263	A549	lung:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
19	CTCF	chr1:196797120-196797270	GM12868	blood:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
20	CTCF	chr1:196712346-196712700	A549	lung:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
21	CTCF	chr1:196701800-196701950	GM12866	blood:	n/a	n/a
22	CTCF	chr1:196701820-196701970	HPF	lung:	n/a	n/a
23	CTCF	chr1:196692600-196692750	K562	blood:	n/a	n/a
24	CTCF	chr1:196712464-196712628	GM13976	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
25	CTCF	chr1:196692580-196692730	GM12878	blood:	n/a	n/a
26	CTCF	chr1:196692537-196692751	Kidney_OC	kidney:	n/a	n/a
27	CTCF	chr1:196692560-196692710	GM12872	blood:	n/a	n/a
28	CTCF	chr1:196692580-196692730	GM12871	blood:	n/a	n/a
29	CTCF	chr1:196712459-196712633	MCF-7	breast:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
30	CTCF	chr1:196712480-196712630	HA-sp	spinal cord:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
31	CTCF	chr1:196797070-196797310	GM12878	blood:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
32	CTCF	chr1:196712500-196712650	HMEC	breast:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
33	CTCF	chr1:196692560-196692710	HEEpiC	esophagus:	n/a	n/a
34	CTCF	chr1:196712532-196712590	GM10248	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
35	CTCF	chr1:196797020-196797170	RPTEC	kidney:	n/a	n/a
36	CTCF	chr1:196692550-196692748	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr1:196797140-196797290	GM06990	blood:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
38	CTCF	chr1:196712500-196712650	NB4	blood:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
39	CTCF	chr1:196712441-196712682	MCF-7	breast:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
40	CTCF	chr1:196808521-196808574	GM20000	blood:	n/a	n/a
41	CTCF	chr1:196692580-196692730	SAEC	small airway:	n/a	n/a
42	CTCF	chr1:196701747-196701939	MCF-7	breast:	n/a	n/a
43	CTCF	chr1:196701760-196701910	HepG2	liver:	n/a	n/a
44	CTCF	chr1:196692560-196692710	NHLF	lung:	n/a	n/a
45	CTCF	chr1:196701800-196701950	MCF-7	breast:	n/a	n/a
46	CTCF	chr1:196797120-196797270	AG09309	skin:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
47	CTCF	chr1:196797100-196797250	Hela-S3	cervix:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178
48	CTCF	chr1:196692527-196692771	GM13977	blood:	n/a	n/a
49	CTCF	chr1:196712471-196712652	HepG2	liver:	n/a	chr1:196712547-196712554 chr1:196712544-196712560 chr1:196712543-196712561 chr1:196712545-196712566
50	CTCF	chr1:196797100-196797250	WI-38	lung:	n/a	chr1:196797163-196797184 chr1:196797161-196797179 chr1:196797165-196797172 chr1:196797162-196797178

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:196746875-196746925	GM12891	blood:	n/a
2	chr1:196795943-196795993	HEK293	kidney:	embryo
3	chr1:196787850-196787900	NB4	blood:	n/a
4	chr1:196746875-196746925	A549	lung:	n/a
5	chr1:196795943-196795993	NB4	blood:	n/a
6	chr1:196746875-196746925	RPTEC	kidney:	n/a
7	chr1:196702931-196702981	Hepatocyte	liver:	n/a
8	chr1:196795943-196795993	AG10803	skin:	n/a
9	chr1:196795943-196795993	SK-N-SH_RA	brain:	n/a
10	chr1:196795943-196795993	GM12878	blood:	n/a
11	chr1:196787850-196787900	ECC-1	luminal epithelium:	n/a
12	chr1:196743672-196743722	Jurkat	blood:	n/a
13	chr1:196795943-196795993	Hepatocyte	liver:	n/a
14	chr1:196787850-196787900	AG04449	skin:	fetal
15	chr1:196746875-196746925	K562	blood:	n/a
16	chr1:196787850-196787900	CMK	blood:	n/a
17	chr1:196743672-196743722	NT2-D1	testis:	n/a
18	chr1:196746875-196746925	SKMC	muscle:	n/a
19	chr1:196795943-196795993	PFSK-1	brain:	n/a
20	chr1:196743672-196743722	PANC-1	pancreas:	n/a
21	chr1:196743672-196743722	NHBE	bronchial:	n/a
22	chr1:196795943-196795993	GM06990	blood:	n/a
23	chr1:196787850-196787900	GM19239	blood:	n/a
24	chr1:196702931-196702981	U87	brain:	n/a
25	chr1:196795943-196795993	AoSMC	blood vessel:	n/a
26	chr1:196787850-196787900	A549	lung:	n/a
27	chr1:196743672-196743722	Hepatocyte	liver:	n/a
28	chr1:196702931-196702981	PrEC	prostate:	n/a
29	chr1:196702931-196702981	AoSMC	blood vessel:	n/a
30	chr1:196746875-196746925	AG09319	gingival:	n/a
31	chr1:196702931-196702981	AG09309	skin:	n/a
32	chr1:196702931-196702981	HNPCEpiC	eye:	n/a
33	chr1:196787850-196787900	HRCEpiC	kidney:	n/a
34	chr1:196795943-196795993	RPTEC	kidney:	n/a
35	chr1:196702931-196702981	IMR90	lung:	fetal
36	chr1:196787850-196787900	T-47D	breast:	n/a
37	chr1:196787850-196787900	BE2_C	brain:	n/a
38	chr1:196746875-196746925	AG04449	skin:	fetal
39	chr1:196795943-196795993	BJ	skin:	n/a
40	chr1:196743672-196743722	NB4	blood:	n/a
41	chr1:196702931-196702981	AG10803	skin:	n/a
42	chr1:196795943-196795993	AG09319	gingival:	n/a
43	chr1:196743672-196743722	AoSMC	blood vessel:	n/a
44	chr1:196795943-196795993	SK-N-SH	brain:	n/a
45	chr1:196787850-196787900	HEK293	kidney:	embryo
46	chr1:196746875-196746925	BJ	skin:	n/a
47	chr1:196787850-196787900	MCF-7	breast:	n/a
48	chr1:196787850-196787900	AG09319	gingival:	n/a
49	chr1:196746875-196746925	GM12878	blood:	n/a
50	chr1:196743672-196743722	AG04450	lung:	fetal

No.	Distal block	Cell Line	Cell type
1	chr1:196738269..196739930-chr1:196742962..196745311,2	MCF-7	breast:
2	chr1:196692236..196693111-chr1:196859470..196860182,3	MCF-7	breast:
3	chr1:196712193..196713017-chr1:197326079..197326750,3	MCF-7	breast:
4	chr1:196706600..196708493-chr1:196711945..196714734,2	K562	blood:
5	chr1:196692213..196693146-chr1:196701336..196702240,4	MCF-7	breast:
6	chr1:196697444..196700419-chr1:196700685..196703503,2	K562	blood:
7	chr1:196700723..196702673-chr1:196877017..196878794,2	K562	blood:
8	chr1:196734362..196735975-chr1:196744220..196746531,2	MCF-7	breast:
9	chr1:196706600..196708493-chr1:196711945..196714734,2	K562	blood:
10	chr1:196629812..196630524-chr1:196701384..196702319,3	MCF-7	breast:
11	chr1:196712168..196712942-chr1:196796703..196797590,3	MCF-7	breast:
12	chr1:196711931..196712944-chr1:196796605..196797511,4	MCF-7	breast:
13	chr1:196711011..196712654-chr1:196796494..196798129,2	MCF-7	breast:
14	chr1:196687090..196688977-chr1:196689893..196692748,2	MCF-7	breast:
15	chr1:196711011..196712654-chr1:196796494..196798129,2	MCF-7	breast:
16	chr1:196692213..196693146-chr1:196701336..196702240,4	MCF-7	breast:
17	chr1:196711931..196712944-chr1:196796605..196797511,4	MCF-7	breast:
18	chr1:196687090..196688977-chr1:196689893..196692748,2	MCF-7	breast:
19	chr1:196697444..196700419-chr1:196700685..196703503,2	K562	blood:
20	chr1:196796721..196797658-chr1:196859492..196860452,2	MCF-7	breast:
21	chr1:196734362..196735975-chr1:196744220..196746531,2	MCF-7	breast:
22	chr1:196712121..196712996-chr1:197035666..197036522,2	MCF-7	breast:
23	chr1:196712168..196712942-chr1:196796703..196797590,3	MCF-7	breast:
24	chr1:196701976..196704900-chr1:197163664..197165558,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFHR1-1	chr1:196762447-196762763	NONHSAT008599
2	lnc-CFHR2-1	chr1:196797280-196797376	NONHSAT008600
3	lnc-CFHR1-1	chr1:196758890-196759357	NONHSAT008599
4	lnc-CFHR2-1	chr1:196788995-196789032	NONHSAT008602
5	lnc-CFHR2-1	chr1:196797200-196797225	NONHSAT008600
6	lnc-CFHR2-1	chr1:196788952-196789032	NONHSAT008601
7	lnc-CFHR2-1	chr1:196795959-196796135	NONHSAT008600
8	lnc-CFHR2-1	chr1:196788893-196789032	NONHSAT008600
9	lnc-CFHR2-1	chr1:196794354-196794801	NONHSAT008603
10	lnc-CFHR2-1	chr1:196795959-196796135	NONHSAT008603
11	lnc-CFHR2-1	chr1:196797200-196797297	NONHSAT008603
12	lnc-CFHR2-1	chr1:196790015-196790332	NONHSAT008601
13	lnc-CFHR2-1	chr1:196794607-196794801	NONHSAT008600
14	lnc-CFHR2-1	chr1:196794607-196795156	NONHSAT008602

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CFH	hsa-miR-146a-5p	chr1:196716478-196716499

Variant related genes	Relation type
CFH	TF binding region
CFHR4	TF binding region
CFHR2	TF binding region
CFHR1	TF binding region
CFHR3	TF binding region
CFH	CpG island
CFHR4	CpG island
CFHR2	CpG island
CFHR1	CpG island
CFHR3	CpG island
ENSG00000116785	chromatin interactions
ENSG00000143278	chromatin interactions

Extended variants
information (count: 4284 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:4284 , 50 per page) page: 1 2 3 4 5 6 7 ... 86

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10801557	chr1:196669581-196669582	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs537392224	chr1:196669629-196669630	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs558769384	chr1:196669637-196669638	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs143792583	chr1:196669671-196669672	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs148169147	chr1:196669739-196669740	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs550520235	chr1:196669783-196669784	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs397795813	chr1:196669798-196669799	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs553062844	chr1:196669800-196669801	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs574587604	chr1:196669801-196669802	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs541454764	chr1:196669809-196669810	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs371771086	chr1:196669862-196669863	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs563334959	chr1:196669877-196669878	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs181712913	chr1:196669945-196669946	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs562391440	chr1:196669959-196669960	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs546502124	chr1:196670033-196670034	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536496280	chr1:196670056-196670057	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs369138603	chr1:196670067-196670068	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs116556176	chr1:196670087-196670088	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs546800828	chr1:196670088-196670089	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568171221	chr1:196670123-196670124	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs76641122	chr1:196670162-196670163	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs550691810	chr1:196670168-196670169	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569268007	chr1:196670234-196670235	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs536925159	chr1:196670248-196670249	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558857024	chr1:196670267-196670268	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570769353	chr1:196670295-196670296	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs551152971	chr1:196670321-196670322	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534761485	chr1:196670398-196670399	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370104499	chr1:196670437-196670438	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201778232	chr1:196670459-196670460	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs374428087	chr1:196670471-196670472	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377456943	chr1:196670481-196670482	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564829016	chr1:196670485-196670486	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369090197	chr1:196670491-196670492	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs569016201	chr1:196670507-196670508	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74443307	chr1:196670520-196670521	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374588771	chr1:196670650-196670651	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs115373020	chr1:196670699-196670700	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556659202	chr1:196670708-196670709	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs575146765	chr1:196670726-196670727	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs545413601	chr1:196670739-196670740	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs4658046	chr1:196670757-196670758	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs186882161	chr1:196670778-196670779	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs150508584	chr1:196670790-196670791	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561986255	chr1:196670795-196670796	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191329748	chr1:196670804-196670805	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs10754199	chr1:196670839-196670840	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs566438486	chr1:196670856-196670857	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs139826550	chr1:196670865-196670866	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs569267312	chr1:196670909-196670910	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196628800-196679400	Weak transcription	Psoas Muscle	Psoas
2	chr1:196629200-196672600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:196639800-196670400	Weak transcription	Adipose Nuclei	Adipose
4	chr1:196640000-196676800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:196642000-196675200	Weak transcription	Fetal Stomach	stomach
6	chr1:196646000-196678400	Weak transcription	K562	blood
7	chr1:196648200-196670200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:196648400-196706200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:196649600-196707200	Weak transcription	Osteobl	bone
10	chr1:196653600-196673600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:196653800-196669600	Weak transcription	Lung	lung
12	chr1:196655000-196671600	Weak transcription	Esophagus	oesophagus
13	chr1:196655200-196672200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:196659600-196670400	Weak transcription	HSMM	muscle
15	chr1:196660000-196692600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:196666800-196676000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:196668200-196671600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:196668600-196678200	Strong transcription	Liver	Liver
19	chr1:196668800-196675800	Strong transcription	Dnd41	blood
20	chr1:196669200-196671200	Strong transcription	Primary hematopoietic stem cells	blood
21	chr1:196669200-196672000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:196669200-196675800	Strong transcription	Ovary	ovary
23	chr1:196669200-196676200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr1:196669200-196676800	Strong transcription	Fetal Muscle Leg	muscle
25	chr1:196669400-196670000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:196669400-196671400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:196670000-196670800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:196670000-196671000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:196670400-196671000	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr1:196670400-196671400	Strong transcription	HSMM	muscle
31	chr1:196670800-196673600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:196671000-196674800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:196671000-196685400	Weak transcription	Adipose Nuclei	Adipose
34	chr1:196671200-196673400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr1:196671400-196695600	Weak transcription	HSMM	muscle
36	chr1:196671600-196676000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:196672000-196673400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:196672200-196672600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr1:196672600-196673600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:196673400-196676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:196673600-196673800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
42	chr1:196673600-196674000	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr1:196673600-196692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:196674000-196706600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:196675800-196685400	Weak transcription	Dnd41	blood
46	chr1:196675800-196686800	Weak transcription	Ovary	ovary
47	chr1:196676000-196700600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:196676200-196692400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:196676600-196685400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:196676800-196692800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

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