Variant report

Variant	nsv471236
Chromosome Location	chr15:34652683-34800594
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2133)
CpG islands
(count:1833)
Chromatin interactive
region (count:79)
LncRNA
region (count:5)
Mature miRNA
region (count: 2)
miRNA target
sites (count:0)

(count:2133 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:34659662-34660316	K562	blood:	n/a	n/a
2	ARID3A	chr15:34781246-34781587	K562	blood:	n/a	n/a
3	ARID3A	chr15:34659927-34660209	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:34731584-34731600	K562	blood:	n/a	n/a
5	ATF1	chr15:34761374-34761389	K562	blood:	n/a	n/a
6	ATF2	chr15:34659423-34660283	GM12878	blood:	n/a	n/a
7	ATF2	chr15:34662101-34662703	GM12878	blood:	n/a	n/a
8	ATF2	chr15:34662115-34662776	GM12878	blood:	n/a	n/a
9	ATF3	chr15:34781262-34781502	K562	blood:	n/a	n/a
10	BACH1	chr15:34729369-34729390	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr15:34659688-34659949	K562	blood:	n/a	n/a
12	BACH1	chr15:34659514-34660110	H1-hESC	embryonic stem cell:	n/a	n/a
13	BATF	chr15:34695287-34695628	GM12878	blood:	n/a	n/a
14	BATF	chr15:34662171-34662762	GM12878	blood:	n/a	chr15:34662522-34662532
15	BATF	chr15:34696116-34696523	GM12878	blood:	n/a	n/a
16	BATF	chr15:34695261-34695641	GM12878	blood:	n/a	n/a
17	BATF	chr15:34762243-34762455	GM12878	blood:	n/a	n/a
18	BATF	chr15:34696017-34696728	GM12878	blood:	n/a	n/a
19	BATF	chr15:34662207-34662693	GM12878	blood:	n/a	chr15:34662522-34662532
20	BCL11A	chr15:34696015-34696513	GM12878	blood:	n/a	n/a
21	BCL11A	chr15:34695333-34695638	GM12878	blood:	n/a	n/a
22	BCL3	chr15:34658349-34658775	A549	lung:	n/a	chr15:34658634-34658643 chr15:34658576-34658585
23	BCL3	chr15:34659429-34660041	GM12878	blood:	n/a	chr15:34659481-34659494
24	BCL3	chr15:34659432-34660351	A549	lung:	n/a	chr15:34659481-34659494
25	BCLAF1	chr15:34729841-34730371	GM12878	blood:	n/a	n/a
26	BCLAF1	chr15:34729008-34729495	GM12878	blood:	n/a	chr15:34729354-34729367 chr15:34729445-34729458
27	BCLAF1	chr15:34659342-34660312	GM12878	blood:	n/a	chr15:34659481-34659494
28	BCLAF1	chr15:34659455-34660246	GM12878	blood:	n/a	chr15:34659481-34659494
29	BHLHE40	chr15:34728512-34728697	K562	blood:	n/a	n/a
30	BHLHE40	chr15:34659383-34660118	GM12878	blood:	n/a	n/a
31	BHLHE40	chr15:34662576-34662605	GM12878	blood:	n/a	n/a
32	BHLHE40	chr15:34729075-34729345	K562	blood:	n/a	n/a
33	BHLHE40	chr15:34729903-34730377	HepG2	liver:	n/a	n/a
34	BHLHE40	chr15:34658419-34659108	K562	blood:	n/a	chr15:34658672-34658688 chr15:34658923-34658939
35	BHLHE40	chr15:34658543-34658731	GM12878	blood:	n/a	chr15:34658672-34658688
36	BHLHE40	chr15:34659005-34659066	GM12878	blood:	n/a	n/a
37	BHLHE40	chr15:34659492-34660184	K562	blood:	n/a	n/a
38	BHLHE40	chr15:34781166-34781584	K562	blood:	n/a	n/a
39	BHLHE40	chr15:34754120-34754185	K562	blood:	n/a	n/a
40	BHLHE40	chr15:34657488-34657770	GM12878	blood:	n/a	n/a
41	BHLHE40	chr15:34729879-34730508	K562	blood:	n/a	n/a
42	BHLHE40	chr15:34729886-34730498	GM12878	blood:	n/a	n/a
43	BRCA1	chr15:34659567-34660241	Hela-S3	cervix:	n/a	n/a
44	BRCA1	chr15:34659603-34659756	HepG2	liver:	n/a	n/a
45	BRCA1	chr15:34659977-34660036	HepG2	liver:	n/a	n/a
46	BRCA1	chr15:34659892-34660291	GM12878	blood:	n/a	n/a
47	CBX3	chr15:34659657-34660230	K562	blood:	n/a	n/a
48	CBX3	chr15:34732091-34732455	K562	blood:	n/a	n/a
49	CBX3	chr15:34781179-34781807	K562	blood:	n/a	n/a
50	CBX3	chr15:34729907-34730280	HCT-116	colon:	n/a	n/a

(count:1833 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34662635-34662685	HUVEC	blood vessel:	n/a
2	chr15:34659687-34659737	SK-N-SH	brain:	n/a
3	chr15:34729310-34729360	AG04449	skin:	fetal
4	chr15:34662635-34662685	HUVEC	blood vessel:	n/a
5	chr15:34659687-34659737	SK-N-SH	brain:	n/a
6	chr15:34729310-34729360	AG04449	skin:	fetal
7	chr15:34700272-34700322	AG09319	gingival:	n/a
8	chr15:34788847-34788897	HL-60	blood:	n/a
9	chr15:34787920-34787970	LNCaP	prostate:	n/a
10	chr15:34729026-34729076	AG09319	gingival:	n/a
11	chr15:34659585-34659635	HL-60	blood:	n/a
12	chr15:34781969-34782019	SAEC	small airway:	n/a
13	chr15:34782820-34782870	SK-N-MC	brain:	n/a
14	chr15:34660076-34660126	HRCEpiC	kidney:	n/a
15	chr15:34787920-34787970	AG04449	skin:	fetal
16	chr15:34781891-34781941	HRE	kidney:	n/a
17	chr15:34782820-34782870	CMK	blood:	n/a
18	chr15:34727209-34727259	SK-N-SH	brain:	n/a
19	chr15:34781891-34781941	HepG2	liver:	n/a
20	chr15:34785380-34785430	SKMC	muscle:	n/a
21	chr15:34657364-34657414	RPTEC	kidney:	n/a
22	chr15:34659969-34660019	AG10803	skin:	n/a
23	chr15:34726650-34726700	NB4	blood:	n/a
24	chr15:34727209-34727259	H1-hESC	embryonic stem cell:	embryo
25	chr15:34781891-34781941	HCF	heart:	n/a
26	chr15:34785380-34785430	HepG2	liver:	n/a
27	chr15:34791564-34791614	SAEC	small airway:	n/a
28	chr15:34659304-34659354	HRCEpiC	kidney:	n/a
29	chr15:34781705-34781755	GM06990	blood:	n/a
30	chr15:34782167-34782217	Hela-S3	cervix:	n/a
31	chr15:34786594-34786644	AoSMC	blood vessel:	n/a
32	chr15:34788847-34788897	NB4	blood:	n/a
33	chr15:34788847-34788897	NT2-D1	testis:	n/a
34	chr15:34730071-34730121	MCF10A-Er-Src	breast:	n/a
35	chr15:34659585-34659635	T-47D	breast:	n/a
36	chr15:34659969-34660019	NB4	blood:	n/a
37	chr15:34729310-34729360	BJ	skin:	n/a
38	chr15:34787920-34787970	RPTEC	kidney:	n/a
39	chr15:34658812-34658862	HL-60	blood:	n/a
40	chr15:34787920-34787970	HRE	kidney:	n/a
41	chr15:34658812-34658862	U87	brain:	n/a
42	chr15:34729115-34729165	T-47D	breast:	n/a
43	chr15:34788847-34788897	NH-A	brain:	n/a
44	chr15:34660076-34660126	HAEpiC	amniotic membrane:	n/a
45	chr15:34662635-34662685	SKMC	muscle:	n/a
46	chr15:34729310-34729360	SAEC	small airway:	n/a
47	chr15:34662635-34662685	AG04449	skin:	fetal
48	chr15:34662635-34662685	HCM	heart:	n/a
49	chr15:34671426-34671476	LNCaP	prostate:	n/a
50	chr15:34730071-34730121	ECC-1	luminal epithelium:	n/a

(count:79 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr15:34500928..34503711-chr15:34659510..34661352,2	MCF-7	breast:
2	chr15:34790196..34793794-chr15:34794467..34797662,3	K562	blood:
3	chr15:34662221..34663969-chr15:34664230..34666356,2	MCF-7	breast:
4	chr15:34728587..34731061-chr15:34780506..34783189,2	K562	blood:
5	chr15:34633629..34635584-chr15:34657779..34659599,2	MCF-7	breast:
6	chr15:34770080..34772217-chr15:34772786..34775252,2	K562	blood:
7	chr15:34634571..34635945-chr15:34658808..34660439,12	MCF-7	breast:
8	chr14:67878348..67879211-chr15:34659300..34659943,2	Hela-S3	cervix:
9	chr15:34727581..34729084-chr15:34874171..34876472,2	MCF-7	breast:
10	chr15:34636826..34639011-chr15:34652309..34655135,2	K562	blood:
11	chr15:34720616..34722466-chr15:34725764..34728714,2	K562	blood:
12	chr15:34629384..34632183-chr15:34656418..34659243,3	MCF-7	breast:
13	chr15:34727667..34729400-chr15:34875206..34876777,2	K562	blood:
14	chr15:34774551..34776237-chr15:34779411..34782082,2	K562	blood:
15	chr15:34654804..34656714-chr15:34658910..34661703,3	K562	blood:
16	chr15:34659866..34661509-chr15:34661998..34663782,2	K562	blood:
17	chr15:34659566..34660339-chr15:34879136..34879733,2	MCF-7	breast:
18	chr15:34727095..34731466-chr15:34878887..34881950,4	K562	blood:
19	chr15:34500871..34503422-chr15:34659158..34662481,4	K562	blood:
20	chr15:34658931..34659843-chr17:42401742..42402293,2	HCT-116	colon:
21	chr15:34330374..34330923-chr15:34659512..34660213,2	K562	blood:
22	chr11:62420159..62420929-chr15:34659289..34659854,2	Hela-S3	cervix:
23	chr15:34659441..34662117-chr15:34875107..34877933,3	K562	blood:
24	chr15:34515761..34518007-chr15:34659442..34662221,3	K562	blood:
25	chr15:34728587..34731061-chr15:34780506..34783189,2	K562	blood:
26	chr15:34728066..34730668-chr15:34791069..34792682,2	K562	blood:
27	chr15:34769198..34772919-chr15:34774454..34777192,3	K562	blood:
28	chr15:34635005..34635906-chr15:34659046..34660693,6	K562	blood:
29	chr15:34761476..34764376-chr15:34768521..34770931,2	K562	blood:
30	chr15:34783968..34786265-chr15:34799018..34801586,2	K562	blood:
31	chr1:20812111..20812967-chr15:34659407..34660267,2	HCT-116	colon:
32	chr15:34769198..34772919-chr15:34774454..34777192,3	K562	blood:
33	chr15:34654804..34656714-chr15:34658910..34661703,3	K562	blood:
34	chr15:34646986..34649043-chr15:34651074..34652808,2	MCF-7	breast:
35	chr15:34633689..34636672-chr15:34659379..34661265,2	MCF-7	breast:
36	chr15:34515223..34518649-chr15:34658701..34662221,4	K562	blood:
37	chr15:34790342..34793794-chr15:34793900..34797346,3	K562	blood:
38	chr15:34655711..34662054-chr15:34662110..34667087,9	K562	blood:
39	chr15:34654880..34657124-chr15:34662673..34664645,2	MCF-7	breast:
40	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
41	chr15:34786054..34786721-chr7:5632299..5632821,2	HCT-116	colon:
42	chr15:34770080..34772217-chr15:34772786..34775252,2	K562	blood:
43	chr15:34658082..34661057-chr15:34874863..34877414,3	MCF-7	breast:
44	chr15:34761476..34764376-chr15:34768521..34770931,2	K562	blood:
45	chr15:34729318..34730097-chr5:1799590..1800354,2	Hela-S3	cervix:
46	chr15:34393027..34397233-chr15:34658612..34660877,5	K562	blood:
47	chr15:34635280..34637526-chr15:34658001..34660457,2	K562	blood:
48	chr15:34634909..34635862-chr15:34659481..34660032,2	MCF-7	breast:
49	chr15:34659866..34661509-chr15:34661998..34663782,2	K562	blood:
50	chr15:34393027..34394938-chr15:34659377..34661190,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GOLGA8B-1	chr15:34752685-34752950	uc_384_-
2	lnc-LPCAT4-1	chr15:34720816-34721126	NONHSAT041586
3	lnc-LPCAT4-1	chr15:34699777-34699936	NONHSAT041586
4	lnc-C15orf55-4	chr15:34752685-34752950	uc_384_+
5	lnc-LPCAT4-1	chr15:34698878-34699071	NONHSAT041586

miRNA name	Chromosome Location	mirBase accession
hsa-miR-1233-3p	chr15:34674270-34674289	MIMAT0005588
hsa-miR-1233-5p	chr15:34674327-34674348	MIMAT0022943

No data

Variant related genes	Relation type
ENSG00000259904	TF binding region
GOLGA8A	TF binding region
ENSG00000266205	TF binding region
MIR1233-1	TF binding region
LPCAT4	TF binding region
ENSG00000261081	TF binding region
ENSG00000261559	TF binding region
ENSG00000260639	TF binding region
HNRNPLP2	TF binding region
ENSG00000259904	CpG island
GOLGA8A	CpG island
ENSG00000266205	CpG island
MIR1233-1	CpG island
LPCAT4	CpG island
ENSG00000261081	CpG island
ENSG00000261559	CpG island
ENSG00000260639	CpG island
HNRNPLP2	CpG island
ENSG00000182405	chromatin interactions
ENSG00000215252	chromatin interactions
ENSG00000100558	chromatin interactions
ENSG00000188483	chromatin interactions
ENSG00000175265	chromatin interactions
ENSG00000013306	chromatin interactions
ENSG00000162545	chromatin interactions
ENSG00000184507	chromatin interactions
ENSG00000176454	chromatin interactions
ENSG00000075618	chromatin interactions
ENSG00000182117	chromatin interactions
ENSG00000248668	chromatin interactions
ENSG00000171421	chromatin interactions
ENSG00000259904	chromatin interactions
ENSG00000134153	chromatin interactions
ENSG00000184009	chromatin interactions
ENSG00000259917	chromatin interactions
ENSG00000128463	chromatin interactions
ENSG00000200997	chromatin interactions
ENSG00000185085	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000266205	chromatin interactions
ENSG00000083720	chromatin interactions
ENSG00000140199	chromatin interactions
ENSG00000134152	chromatin interactions

Extended variants
information (count: 4206 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:4206 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17236875	chr15:34652683-34652684	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs554301906	chr15:34652728-34652729	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs372969812	chr15:34652756-34652757	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs572871664	chr15:34652862-34652863	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs533695801	chr15:34652889-34652890	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs529787174	chr15:34652918-34652919	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs191201325	chr15:34652920-34652921	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs182150672	chr15:34652954-34652955	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs563146525	chr15:34653053-34653054	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs575045295	chr15:34653099-34653100	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs542186718	chr15:34653192-34653193	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs7175892	chr15:34653194-34653195	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs187869900	chr15:34653224-34653225	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs150351354	chr15:34653227-34653228	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs192388736	chr15:34653295-34653296	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs6495664	chr15:34653300-34653301	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs184395145	chr15:34653315-34653316	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs569115603	chr15:34653323-34653324	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs138034340	chr15:34653340-34653341	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs552164664	chr15:34653407-34653408	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs377081523	chr15:34653425-34653426	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs188471132	chr15:34653474-34653475	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs566382601	chr15:34653530-34653531	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs371630230	chr15:34653561-34653562	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs202182531	chr15:34653613-34653614	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs146998323	chr15:34653632-34653633	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs138128066	chr15:34653644-34653645	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs570759512	chr15:34653650-34653651	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs201074603	chr15:34653652-34653653	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs143597703	chr15:34653684-34653685	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs534885544	chr15:34653686-34653687	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs369192033	chr15:34653712-34653713	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs200483893	chr15:34653721-34653722	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs192894758	chr15:34653727-34653728	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs368001894	chr15:34653737-34653738	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs149495349	chr15:34653738-34653739	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs376158772	chr15:34653757-34653758	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs542200414	chr15:34653764-34653765	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs201967965	chr15:34653777-34653778	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs143944476	chr15:34653878-34653879	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs572305813	chr15:34653898-34653899	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs568228097	chr15:34653909-34653910	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs576144454	chr15:34653910-34653911	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs535533330	chr15:34653911-34653912	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs529016313	chr15:34653914-34653915	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs71119958	chr15:34653920-34653921	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs531726838	chr15:34653923-34653924	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs543979058	chr15:34653946-34653947	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs12904830	chr15:34653963-34653964	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs529988830	chr15:34653966-34653967	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1896 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34635600-34657200	Weak transcription	Right Atrium	heart
2	chr15:34642000-34657600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34644400-34657000	Weak transcription	Fetal Brain Male	brain
4	chr15:34644400-34657600	Weak transcription	HepG2	liver
5	chr15:34645400-34654400	Strong transcription	Fetal Intestine Small	intestine
6	chr15:34645400-34656600	Strong transcription	Thymus	Thymus
7	chr15:34645400-34657800	Strong transcription	Fetal Stomach	stomach
8	chr15:34645600-34653800	Strong transcription	Fetal Intestine Large	intestine
9	chr15:34645600-34654400	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:34645600-34656400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:34645600-34656600	Strong transcription	Primary T cells from cord blood	blood
12	chr15:34645800-34654600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:34645800-34655800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr15:34645800-34655800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:34645800-34656400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:34645800-34656600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:34645800-34656600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:34645800-34657000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:34646200-34652800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:34646200-34655400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:34646400-34654600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:34646400-34656000	Strong transcription	H9 Cell Line	embryonic stem cell
23	chr15:34646400-34656600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:34646600-34655000	Strong transcription	Lung	lung
25	chr15:34646600-34656200	Strong transcription	Fetal Brain Female	brain
26	chr15:34646600-34656400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:34646600-34656400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:34646600-34656600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:34646600-34656600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr15:34646600-34657600	Strong transcription	Fetal Muscle Leg	muscle
31	chr15:34646600-34658000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr15:34646800-34655200	Strong transcription	Rectal Smooth Muscle	rectum
33	chr15:34646800-34657200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:34647000-34653800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr15:34647000-34654800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:34647000-34656400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:34647000-34656600	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:34647000-34657400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:34647200-34656400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr15:34647200-34656800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:34647200-34658000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:34647400-34653400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:34647400-34656200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:34647400-34657200	Strong transcription	Osteobl	bone
45	chr15:34647600-34655200	Strong transcription	Right Ventricle	heart
46	chr15:34647600-34656200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:34647600-34656400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:34647600-34657000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr15:34648000-34655400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:34648000-34655400	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links