Variant report
Variant | nsv474 |
---|---|
Chromosome Location | chr11:106757020-106795146 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:106767415..106770075-chr11:106776264..106779232,2 | K562 | blood: | |
2 | chr11:106770027..106773007-chr11:106773541..106775762,2 | K562 | blood: | |
3 | chr11:106767415..106770075-chr11:106776264..106779232,2 | K562 | blood: | |
4 | chr11:106770027..106773007-chr11:106773541..106775762,2 | K562 | blood: |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs548055068 | chr11:106764414-106764415 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs573907617 | chr11:106764450-106764451 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs536043966 | chr11:106764472-106764473 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs114247645 | chr11:106764487-106764488 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs186918474 | chr11:106764488-106764489 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs191694244 | chr11:106764511-106764512 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs570856933 | chr11:106764557-106764558 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs534969166 | chr11:106764602-106764603 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs530191001 | chr11:106764633-106764634 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs113427690 | chr11:106764726-106764727 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs542436974 | chr11:106764774-106764775 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs557255724 | chr11:106764855-106764856 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs556361388 | chr11:106764856-106764857 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs576127537 | chr11:106764888-106764889 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs79646875 | chr11:106764919-106764920 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs564589389 | chr11:106764941-106764942 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs531987724 | chr11:106764979-106764980 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs374087717 | chr11:106764996-106764997 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs35598090 | chr11:106774021-106774022 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs184396247 | chr11:106774096-106774097 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs143948462 | chr11:106774117-106774118 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs377759868 | chr11:106774131-106774132 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs2156588 | chr11:106774133-106774134 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs12363747 | chr11:106774136-106774137 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs189276122 | chr11:106774185-106774186 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs533713113 | chr11:106774290-106774291 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs555850079 | chr11:106774317-106774318 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs573773398 | chr11:106774336-106774337 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs140432942 | chr11:106774349-106774350 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs181169906 | chr11:106774352-106774353 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs144809157 | chr11:106774359-106774360 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs549866234 | chr11:106774374-106774375 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs577965893 | chr11:106774394-106774395 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs545689665 | chr11:106774453-106774454 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs2226874 | chr11:106774455-106774456 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
36 | rs17652539 | chr11:106774457-106774458 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs549285886 | chr11:106774469-106774470 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs561798860 | chr11:106774492-106774493 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs528987429 | chr11:106774558-106774559 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs184832480 | chr11:106774561-106774562 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs568870349 | chr11:106774572-106774573 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs147514760 | chr11:106774589-106774590 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs188907558 | chr11:106774607-106774608 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs566625285 | chr11:106774633-106774634 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs558439257 | chr11:106774690-106774691 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs534019832 | chr11:106774717-106774718 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs555128663 | chr11:106774746-106774747 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs573838558 | chr11:106774754-106774755 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs12286463 | chr11:106774802-106774803 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs140161946 | chr11:106774809-106774810 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Wilms tumour | 21544195 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Cancer | 21637783 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Chronic lymphocytic leukemia | 21795749 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 20837533 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Liposarcoma | 21253554 | CNVD |
Neuroblastoma | 18923524 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 16751803 | CNVD |
Seminomas | 18059402 | CNVD |
Cervical cancer | 21062161 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 22429812 | CNVD |
Breast cancer | 16608533 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Hepatocellular carcinoma | 16785998 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 21785460 | CNVD |
Breast cancer | 21958427 | CNVD |
Lung cancer | 18438408 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Breast cancer | 17133270 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 17603634 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Basal cell lymphoma | 16790693 | CNVD |
Chronic lymphocytic leukemia | 21670202 | CNVD |
Breast cancer | 21364760 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Mental retardation | 19966786 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Intracranial aneurysm | 16715129 | CNVD |
Ovine squamous-cell carcinoma | 17599052 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Chronic lymphocytic leukemia | 17805327 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Breast cancer | 16397240 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Neuroblastoma | 17327916 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Esophageal squamous carcinoma | 17470683 | CNVD |
Mantle cell lymphoma | 19029149 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Malignant melanoma | 17260012 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Prostate cancer | 16573809 | CNVD |
Prostate cancer | 18632612 | CNVD |
Obesity | 19966786 | CNVD |
Cancer | 20164919 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:106764400-106765000 | Enhancers | Fetal Heart | heart |
2 | chr11:106774000-106776800 | Enhancers | Fetal Heart | heart |
3 | chr11:106783600-106783800 | Enhancers | Fetal Lung | lung |
4 | chr11:106783800-106785800 | Weak transcription | Fetal Lung | lung |
5 | chr11:106784000-106784200 | Enhancers | Brain Anterior Caudate | brain |
6 | chr11:106784000-106784400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
7 | chr11:106784000-106784400 | Enhancers | Pancreas | Pancrea |
8 | chr11:106785800-106786200 | ZNF genes & repeats | Fetal Lung | lung |
9 | chr11:106786200-106806800 | Weak transcription | Fetal Lung | lung |
10 | chr11:106786600-106787200 | Enhancers | Fetal Heart | heart |
11 | chr11:106792000-106792600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
12 | chr11:106792000-106792800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
13 | chr11:106792400-106793000 | Enhancers | NHDF-Ad | bronchial |
14 | chr11:106792600-106795600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
15 | chr11:106793000-106796400 | Weak transcription | NHDF-Ad | bronchial |
16 | chr11:106795000-106810600 | Weak transcription | Fetal Brain Male | brain |