Variant report

Variant	nsv481651
Chromosome Location	chr6:162297935-162420804
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
2	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
3	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
4	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
5	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
6	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
7	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
8	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
9	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
10	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
11	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
12	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
13	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
14	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
15	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
16	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
17	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
18	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:

No data

Extended variants
information (count: 5043 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:5043 , 50 per page) page: 1 2 3 4 5 6 7 ... 101

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544074276	chr6:162297944-162297945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs540822162	chr6:162297952-162297953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs562280586	chr6:162297964-162297965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs6908423	chr6:162297972-162297973	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs550140079	chr6:162297996-162297997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs549677579	chr6:162298016-162298017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562709661	chr6:162298035-162298036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs574452779	chr6:162298094-162298095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187413851	chr6:162298095-162298096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs141318316	chr6:162298131-162298132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs191830863	chr6:162298169-162298170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547991716	chr6:162298199-162298200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs147100543	chr6:162298210-162298211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs571090999	chr6:162298280-162298281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs540104092	chr6:162298328-162298329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs6909000	chr6:162298351-162298352	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs528742203	chr6:162298377-162298378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs560243863	chr6:162298382-162298383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74908302	chr6:162298385-162298386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535420929	chr6:162298411-162298412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs116930723	chr6:162298439-162298440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs6904517	chr6:162298448-162298449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs540760782	chr6:162298471-162298472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs182924458	chr6:162298475-162298476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553903527	chr6:162298491-162298492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs35664661	chr6:162298494-162298495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs539028258	chr6:162298519-162298520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs577435418	chr6:162298523-162298524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543264797	chr6:162298530-162298531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563606548	chr6:162298536-162298537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs372520758	chr6:162298552-162298553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs527392766	chr6:162298553-162298554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs187519641	chr6:162298554-162298555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191353764	chr6:162298555-162298556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113299911	chr6:162298640-162298641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs576968363	chr6:162298659-162298660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs370593490	chr6:162298668-162298669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150991131	chr6:162298681-162298682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs571030555	chr6:162298712-162298713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564302072	chr6:162298717-162298718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533570732	chr6:162298723-162298724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs550167831	chr6:162298747-162298748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs570324864	chr6:162298779-162298780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs377037189	chr6:162298791-162298792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs368813583	chr6:162298796-162298797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs565352016	chr6:162298866-162298867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150170402	chr6:162298887-162298888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116152543	chr6:162298909-162298910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs115166174	chr6:162298918-162298919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543596053	chr6:162298922-162298923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:475 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162291000-162311400	Weak transcription	Ovary	ovary
2	chr6:162293800-162300600	Weak transcription	Spleen	Spleen
3	chr6:162301400-162301800	Enhancers	Fetal Brain Male	brain
4	chr6:162302000-162303400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:162302800-162303400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:162302800-162303600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:162302800-162304400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:162303400-162303600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:162303600-162311400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:162307200-162310200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:162310000-162327200	Weak transcription	Right Ventricle	heart
12	chr6:162310200-162310400	Enhancers	Brain Substantia Nigra	brain
13	chr6:162310200-162310800	Enhancers	Fetal Brain Male	brain
14	chr6:162310200-162311000	Enhancers	Brain Angular Gyrus	brain
15	chr6:162310200-162311400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:162310200-162312200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:162310400-162310600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr6:162310400-162311000	Enhancers	Brain Hippocampus Middle	brain
19	chr6:162310400-162311000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:162310400-162311200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:162310400-162311200	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:162310400-162311200	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr6:162310400-162311200	Enhancers	Fetal Brain Female	brain
24	chr6:162310400-162311400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
25	chr6:162310400-162311400	Enhancers	Brain Anterior Caudate	brain
26	chr6:162310400-162311400	Enhancers	Brain Germinal Matrix	brain
27	chr6:162310400-162311600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:162310400-162312200	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:162310400-162312200	Enhancers	Fetal Muscle Leg	muscle
30	chr6:162310600-162311400	Enhancers	Fetal Lung	lung
31	chr6:162310800-162311200	Weak transcription	Fetal Brain Male	brain
32	chr6:162311000-162311200	Flanking Active TSS	Brain Angular Gyrus	brain
33	chr6:162311000-162311400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:162311000-162311600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
35	chr6:162311000-162311600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:162311000-162311600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:162311000-162311600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:162311000-162312000	Active TSS	Brain Hippocampus Middle	brain
39	chr6:162311200-162311400	Active TSS	Brain Substantia Nigra	brain
40	chr6:162311200-162311400	Flanking Active TSS	Fetal Brain Female	brain
41	chr6:162311200-162311600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
42	chr6:162311200-162311600	Active TSS	Brain Angular Gyrus	brain
43	chr6:162311200-162311800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:162311200-162311800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:162311200-162312400	Active TSS	Brain Cingulate Gyrus	brain
46	chr6:162311200-162312400	Enhancers	Fetal Brain Male	brain
47	chr6:162311200-162312800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:162311400-162311600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr6:162311400-162311600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:162311400-162311600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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