Variant report

Variant	nsv481686
Chromosome Location	chr6:162434609-162966798
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:44)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
2	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
3	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
4	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
5	chr6:162902802..162905070-chr6:162905406..162907332,2	K562	blood:
6	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
7	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
8	chr6:162820265..162823089-chr6:162827852..162829559,2	K562	blood:
9	chr6:162799485..162803733-chr6:162804296..162807777,5	K562	blood:
10	chr6:162763017..162765353-chr6:162767098..162769301,2	K562	blood:
11	chr6:162902802..162905070-chr6:162905406..162907332,2	K562	blood:
12	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
13	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
14	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
15	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
16	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
17	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
18	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
19	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
20	chr6:162863816..162864618-chr6:163271757..163272511,2	MCF-7	breast:
21	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
22	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
23	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
24	chr6:162863367..162864320-chr6:163157771..163158572,4	MCF-7	breast:
25	chr6:162799485..162803733-chr6:162804296..162807777,5	K562	blood:
26	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
27	chr6:162768506..162770213-chr6:162786241..162788330,2	K562	blood:
28	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
29	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
30	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
31	chr6:162960178..162962006-chr6:162962880..162965078,2	K562	blood:
32	chr6:162721411..162723925-chr6:162726328..162729326,2	K562	blood:
33	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
34	chr6:162721411..162723925-chr6:162726328..162729326,2	K562	blood:
35	chr6:162960178..162962006-chr6:162962880..162965078,2	K562	blood:
36	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
37	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
38	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
39	chr6:162820265..162823089-chr6:162827852..162829559,2	K562	blood:
40	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
41	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
42	chr6:162763017..162765353-chr6:162767098..162769301,2	K562	blood:
43	chr3:66689243..66689865-chr6:162514238..162514739,2	MCF-7	breast:
44	chr6:162768506..162770213-chr6:162786241..162788330,2	K562	blood:

No data

Extended variants
information (count: 21006 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:21006 , 50 per page) page: 1 2 3 4 5 6 7 ... 421

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373351339	chr6:162435040-162435041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs371371940	chr6:162435083-162435084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs547179287	chr6:162435131-162435132	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs36064561	chr6:162435146-162435147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs558292940	chr6:162435149-162435150	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546856891	chr6:162435150-162435151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs139640026	chr6:162435201-162435202	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs539290230	chr6:162435222-162435223	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs7741581	chr6:162435250-162435251	Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs144276522	chr6:162435275-162435276	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs535427654	chr6:162435330-162435331	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs556635011	chr6:162435342-162435343	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs145574153	chr6:162435354-162435355	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs543653581	chr6:162435386-162435387	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs148448306	chr6:162435398-162435399	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs539956814	chr6:162435423-162435424	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs553509737	chr6:162435437-162435438	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs576630949	chr6:162435469-162435470	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs115242874	chr6:162435474-162435475	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs562674726	chr6:162435515-162435516	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs530911847	chr6:162435572-162435573	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs185921261	chr6:162435579-162435580	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs561348587	chr6:162435598-162435599	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs547685643	chr6:162437803-162437804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs143337697	chr6:162437818-162437819	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs368041249	chr6:162437836-162437837	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs76867943	chr6:162437917-162437918	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs183545446	chr6:162437922-162437923	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs139043038	chr6:162437929-162437930	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs189005096	chr6:162437947-162437948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs192442952	chr6:162437953-162437954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs570315109	chr6:162437977-162437978	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs55708256	chr6:162438008-162438009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534868742	chr6:162438019-162438020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs558131476	chr6:162438035-162438036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs142226337	chr6:162438047-162438048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs539857491	chr6:162438101-162438102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs371605450	chr6:162438109-162438110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561686369	chr6:162438146-162438147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs184549162	chr6:162438223-162438224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576446376	chr6:162438257-162438258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537316608	chr6:162438304-162438305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555493641	chr6:162438390-162438391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs572348986	chr6:162438431-162438432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs146312817	chr6:162438445-162438446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs34806458	chr6:162438463-162438464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564834640	chr6:162438490-162438491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532767558	chr6:162438491-162438492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543380080	chr6:162438496-162438497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs189027010	chr6:162438567-162438568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Bipolar disorder	19114987	CNVD
Parkinson disease	21829596	CNVD
Schizophrenia	23813976	CNVD
Gastric cancer	22315472	CNVD
Autism	19404257	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Autism	22495309	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
Schizophrenia	19805367	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:1699 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162435000-162435200	Enhancers	HepG2	liver
2	chr6:162435200-162435600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:162435200-162435600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:162435200-162435600	Flanking Active TSS	HepG2	liver
5	chr6:162437800-162438000	ZNF genes & repeats	Pancreas	Pancrea
6	chr6:162438000-162444600	Weak transcription	Pancreas	Pancrea
7	chr6:162444200-162444600	Enhancers	Stomach Mucosa	stomach
8	chr6:162444600-162444800	ZNF genes & repeats	Pancreas	Pancrea
9	chr6:162444600-162448200	Weak transcription	Stomach Mucosa	stomach
10	chr6:162444800-162452200	Weak transcription	Pancreas	Pancrea
11	chr6:162446400-162449800	Weak transcription	Ovary	ovary
12	chr6:162446600-162447000	Enhancers	Fetal Brain Male	brain
13	chr6:162447000-162447200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:162447000-162448600	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:162447000-162448600	Enhancers	Fetal Intestine Small	intestine
16	chr6:162447200-162447800	Enhancers	Fetal Kidney	kidney
17	chr6:162447200-162447800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr6:162447600-162448400	Active TSS	Liver	Liver
19	chr6:162447800-162448400	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:162448200-162448600	Enhancers	Stomach Mucosa	stomach
21	chr6:162449000-162449200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr6:162449800-162450000	Enhancers	Ovary	ovary
23	chr6:162452600-162452800	Enhancers	Right Atrium	heart
24	chr6:162452800-162453800	Weak transcription	Right Atrium	heart
25	chr6:162453400-162454400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:162453400-162454400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:162453400-162454400	Enhancers	NHDF-Ad	bronchial
28	chr6:162453600-162454200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr6:162453800-162454200	Enhancers	Right Atrium	heart
30	chr6:162455400-162456000	Enhancers	NHEK	skin
31	chr6:162466800-162467000	Enhancers	Pancreas	Pancrea
32	chr6:162467000-162471800	Weak transcription	Pancreas	Pancrea
33	chr6:162470200-162479400	Weak transcription	Ovary	ovary
34	chr6:162471600-162476600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:162471800-162473000	Enhancers	Pancreas	Pancrea
36	chr6:162471800-162476800	Weak transcription	Right Ventricle	heart
37	chr6:162472200-162474800	Weak transcription	Brain Substantia Nigra	brain
38	chr6:162472400-162472600	Enhancers	Fetal Brain Male	brain
39	chr6:162473000-162475000	Weak transcription	Pancreas	Pancrea
40	chr6:162473600-162474400	Enhancers	Fetal Brain Female	brain
41	chr6:162474000-162475200	Enhancers	Liver	Liver
42	chr6:162474000-162478000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:162474200-162474400	Enhancers	Left Ventricle	heart
44	chr6:162474200-162474600	Enhancers	Fetal Brain Male	brain
45	chr6:162474400-162479600	Weak transcription	Left Ventricle	heart
46	chr6:162475000-162476000	Enhancers	Pancreas	Pancrea
47	chr6:162475200-162478200	Weak transcription	Liver	Liver
48	chr6:162476000-162476400	Weak transcription	Pancreas	Pancrea
49	chr6:162476200-162477400	Enhancers	A549	lung
50	chr6:162476400-162477600	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links