Variant report

Variant	nsv481728
Chromosome Location	chr6:162381089-162571635
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:66689243..66689865-chr6:162514238..162514739,2	MCF-7	breast:
2	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
3	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
4	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
5	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
6	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
7	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
8	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
9	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
10	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
11	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
12	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
13	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
14	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
15	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
16	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
17	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
18	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
19	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
20	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:

No data

Extended variants
information (count: 5904 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:5904 , 50 per page) page: 1 2 3 4 5 6 7 ... 119

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533626563	chr6:162381136-162381137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs151099280	chr6:162381165-162381166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570390544	chr6:162381166-162381167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs535089319	chr6:162381181-162381182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs79382765	chr6:162381194-162381195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs74902702	chr6:162381195-162381196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs186181147	chr6:162381216-162381217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs139845682	chr6:162381272-162381273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144947051	chr6:162381301-162381302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs557487950	chr6:162381347-162381348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs4475301	chr6:162381362-162381363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571462679	chr6:162381378-162381379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs543287233	chr6:162381393-162381394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189046489	chr6:162381398-162381399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs141847206	chr6:162381399-162381400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs527547291	chr6:162381432-162381433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs368152833	chr6:162381547-162381548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562159986	chr6:162381584-162381585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527738369	chr6:162381614-162381615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs532479480	chr6:162381633-162381634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541547165	chr6:162381634-162381635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564636530	chr6:162381641-162381642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72571755	chr6:162381690-162381691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs535252904	chr6:162381763-162381764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550698080	chr6:162381773-162381774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs550430433	chr6:162381799-162381800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112575948	chr6:162381800-162381801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs570353980	chr6:162381932-162381933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75584010	chr6:162381947-162381948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs548653323	chr6:162381967-162381968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565677132	chr6:162381990-162381991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs181413016	chr6:162381999-162382000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs557449443	chr6:162382021-162382022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571041723	chr6:162382090-162382091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs186166647	chr6:162382102-162382103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs117722295	chr6:162382186-162382187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs145171898	chr6:162382197-162382198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs1790004	chr6:162382239-162382240	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs536552796	chr6:162382244-162382245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555435594	chr6:162382275-162382276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572420197	chr6:162382288-162382289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs376015204	chr6:162382373-162382374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs190688279	chr6:162382374-162382375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs564555973	chr6:162382416-162382417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs578173098	chr6:162382417-162382418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143270396	chr6:162382462-162382463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563908469	chr6:162382503-162382504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs529519946	chr6:162382545-162382546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549664746	chr6:162382642-162382643	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs60975422	chr6:162382649-162382650	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Bipolar disorder	19114987	CNVD
early-passage human iPS cells	21368824	CNVD
Parkinson disease	21829596	CNVD
Schizophrenia	23813976	CNVD
Gastric cancer	22315472	CNVD

Chromatin state (count:411 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162371000-162384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:162375200-162384800	Weak transcription	Pancreas	Pancrea
3	chr6:162376200-162384200	Weak transcription	Right Atrium	heart
4	chr6:162377200-162384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:162377600-162384200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:162377600-162384400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:162382600-162382800	ZNF genes & repeats	Aorta	Aorta
8	chr6:162382800-162383000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:162382800-162383400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:162382800-162396600	Weak transcription	Aorta	Aorta
11	chr6:162383200-162384400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:162383400-162384400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:162384000-162384400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:162384000-162386000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:162384200-162384400	Enhancers	Right Atrium	heart
16	chr6:162384200-162384600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:162384200-162384800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:162384200-162385000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:162384200-162385200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:162384200-162385400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:162384200-162385400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:162384200-162385600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:162384200-162385600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:162384200-162386000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:162384200-162386200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:162384200-162386200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:162384400-162385000	Weak transcription	Right Atrium	heart
28	chr6:162384400-162385200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:162384400-162385600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:162384400-162385800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:162384400-162386600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:162384600-162385200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:162384600-162385800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr6:162384800-162385200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:162384800-162385200	Enhancers	Brain Anterior Caudate	brain
36	chr6:162384800-162385200	Enhancers	Pancreas	Pancrea
37	chr6:162385000-162385200	Enhancers	Right Atrium	heart
38	chr6:162385200-162385800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:162385200-162386400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr6:162385800-162386000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:162390400-162390600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:162391000-162394600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:162391800-162392600	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr6:162392000-162392600	Enhancers	Fetal Lung	lung
45	chr6:162392600-162392800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:162392600-162395000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:162392600-162395600	Weak transcription	Adipose Nuclei	Adipose
48	chr6:162394200-162394800	Enhancers	Fetal Kidney	kidney
49	chr6:162394400-162394800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:162394600-162395400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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