Variant report

Variant	nsv482161
Chromosome Location	chr11:71498557-71512280
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1036)
CpG islands
(count:366)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1036 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:71499570-71499575	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:71511545-71511692	K562	blood:	n/a	n/a
3	ATF1	chr11:71511476-71511666	K562	blood:	n/a	n/a
4	ATF3	chr11:71511454-71511674	GM12878	blood:	n/a	n/a
5	ATF3	chr11:71511455-71511719	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr11:71499406-71499609	GM12878	blood:	n/a	n/a
7	BATF	chr11:71499485-71499773	GM12878	blood:	n/a	n/a
8	BATF	chr11:71498902-71499183	GM12878	blood:	n/a	n/a
9	BATF	chr11:71511440-71511763	GM12878	blood:	n/a	n/a
10	BATF	chr11:71503748-71504008	GM12878	blood:	n/a	n/a
11	BCL11A	chr11:71511419-71511802	GM12878	blood:	n/a	n/a
12	BCL11A	chr11:71499963-71500296	GM12878	blood:	n/a	n/a
13	BCL11A	chr11:71503781-71503969	GM12878	blood:	n/a	n/a
14	BCL11A	chr11:71511333-71511561	GM12878	blood:	n/a	n/a
15	BCL11A	chr11:71498840-71499221	GM12878	blood:	n/a	chr11:71498863-71498876
16	BCL11A	chr11:71498971-71499169	GM12878	blood:	n/a	n/a
17	BHLHE40	chr11:71511560-71511619	K562	blood:	n/a	n/a
18	BHLHE40	chr11:71498674-71498871	K562	blood:	n/a	n/a
19	BHLHE40	chr11:71498981-71499167	HepG2	liver:	n/a	n/a
20	BHLHE40	chr11:71498569-71498859	GM12878	blood:	n/a	n/a
21	BHLHE40	chr11:71511539-71511623	GM12878	blood:	n/a	n/a
22	BRCA1	chr11:71499265-71499372	Hela-S3	cervix:	n/a	n/a
23	BRCA1	chr11:71498122-71498649	Hela-S3	cervix:	n/a	n/a
24	CBX3	chr11:71511474-71511747	K562	blood:	n/a	n/a
25	CBX3	chr11:71498809-71499238	K562	blood:	n/a	n/a
26	CBX3	chr11:71511330-71511754	K562	blood:	n/a	n/a
27	CEBPB	chr11:71499198-71499572	K562	blood:	n/a	chr11:71499369-71499380
28	CEBPB	chr11:71499283-71499431	K562	blood:	n/a	chr11:71499369-71499380
29	CEBPB	chr11:71499184-71499559	K562	blood:	n/a	chr11:71499369-71499380
30	CEBPB	chr11:71499270-71499540	A549	lung:	n/a	chr11:71499369-71499380
31	CEBPB	chr11:71499184-71499569	IMR90	lung:	n/a	chr11:71499369-71499380
32	CEBPB	chr11:71498481-71498685	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr11:71499179-71499557	Hela-S3	cervix:	n/a	chr11:71499369-71499380
34	CEBPB	chr11:71499194-71499546	A549	lung:	n/a	chr11:71499369-71499380
35	CEBPB	chr11:71505494-71505670	Hela-S3	cervix:	n/a	n/a
36	CEBPB	chr11:71505496-71505709	IMR90	lung:	n/a	n/a
37	CEBPB	chr11:71499197-71499550	HepG2	liver:	n/a	chr11:71499369-71499380
38	CEBPD	chr11:71499281-71499614	K562	blood:	n/a	n/a
39	CEBPD	chr11:71498484-71498760	HepG2	liver:	n/a	n/a
40	CHD2	chr11:71498572-71498617	GM12878	blood:	n/a	n/a
41	CHD2	chr11:71498612-71498760	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD2	chr11:71499189-71499317	Hela-S3	cervix:	n/a	n/a
43	CHD2	chr11:71497655-71498800	Hela-S3	cervix:	n/a	n/a
44	CREB1	chr11:71498004-71498774	HepG2	liver:	n/a	n/a
45	CREB1	chr11:71497807-71498855	A549	lung:	n/a	n/a
46	CTCF	chr11:71503780-71503930	GM12874	blood:	n/a	chr11:71503874-71503883 chr11:71503876-71503897 chr11:71503874-71503892 chr11:71503877-71503890
47	CTCF	chr11:71511500-71511650	HPAF	blood vessel:	n/a	n/a
48	CTCF	chr11:71511179-71511868	K562	blood:	n/a	n/a
49	CTCF	chr11:71511403-71511698	T-47D	breast:	n/a	n/a
50	CTCF	chr11:71503720-71503870	RPTEC	kidney:	n/a	n/a

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:71498609-71498659	HepG2	liver:	n/a
2	chr11:71499117-71499167	HAEpiC	amniotic membrane:	n/a
3	chr11:71498609-71498659	HCM	heart:	n/a
4	chr11:71498609-71498659	ovcar-3	ovarian:	n/a
5	chr11:71499117-71499167	ECC-1	luminal epithelium:	n/a
6	chr11:71511486-71511536	RPTEC	kidney:	n/a
7	chr11:71511486-71511536	MCF-7	breast:	n/a
8	chr11:71499117-71499167	HepG2	liver:	n/a
9	chr11:71499117-71499167	GM19239	blood:	n/a
10	chr11:71498609-71498659	PANC-1	pancreas:	n/a
11	chr11:71502816-71502866	Hepatocyte	liver:	n/a
12	chr11:71498715-71498765	GM19239	blood:	n/a
13	chr11:71498609-71498659	HRCEpiC	kidney:	n/a
14	chr11:71498609-71498659	HEK293	kidney:	embryo
15	chr11:71502816-71502866	AG04449	skin:	fetal
16	chr11:71499006-71499056	PANC-1	pancreas:	n/a
17	chr11:71498609-71498659	HPAEpiC	pulmonary alveolar:	n/a
18	chr11:71498609-71498659	Hela-S3	cervix:	n/a
19	chr11:71502816-71502866	RPTEC	kidney:	n/a
20	chr11:71499117-71499167	PFSK-1	brain:	n/a
21	chr11:71499006-71499056	HRCEpiC	kidney:	n/a
22	chr11:71502816-71502866	A549	lung:	n/a
23	chr11:71499117-71499167	IMR90	lung:	fetal
24	chr11:71498715-71498765	T-47D	breast:	n/a
25	chr11:71499006-71499056	GM19239	blood:	n/a
26	chr11:71499006-71499056	SKMC	muscle:	n/a
27	chr11:71499117-71499167	NB4	blood:	n/a
28	chr11:71499006-71499056	Caco-2	colon:	n/a
29	chr11:71498715-71498765	ECC-1	luminal epithelium:	n/a
30	chr11:71498715-71498765	Hepatocyte	liver:	n/a
31	chr11:71498715-71498765	HCF	heart:	n/a
32	chr11:71498715-71498765	SKMC	muscle:	n/a
33	chr11:71499117-71499167	SK-N-SH	brain:	n/a
34	chr11:71498715-71498765	NHDF-neo	bronchial:	n/a
35	chr11:71499006-71499056	Jurkat	blood:	n/a
36	chr11:71499006-71499056	SK-N-SH_RA	brain:	n/a
37	chr11:71499117-71499167	MCF10A-Er-Src	breast:	n/a
38	chr11:71502816-71502866	HCF	heart:	n/a
39	chr11:71499117-71499167	H1-hESC	embryonic stem cell:	embryo
40	chr11:71502816-71502866	AG09309	skin:	n/a
41	chr11:71511486-71511536	PrEC	prostate:	n/a
42	chr11:71498609-71498659	HL-60	blood:	n/a
43	chr11:71499117-71499167	AG10803	skin:	n/a
44	chr11:71502816-71502866	Caco-2	colon:	n/a
45	chr11:71498609-71498659	T-47D	breast:	n/a
46	chr11:71499006-71499056	K562	blood:	n/a
47	chr11:71499117-71499167	HRE	kidney:	n/a
48	chr11:71499117-71499167	Jurkat	blood:	n/a
49	chr11:71499117-71499167	HNPCEpiC	eye:	n/a
50	chr11:71511486-71511536	GM06990	blood:	n/a

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71498107..71498639-chr3:75483883..75484386,2	Hela-S3	cervix:
2	chr11:71502585..71504558-chr11:71523085..71525009,2	MCF-7	breast:
3	chr11:71498143..71498944-chr16:5147397..5148064,2	Hela-S3	cervix:
4	chr11:71499803..71501328-chr11:71502237..71504426,2	K562	blood:
5	chr11:67572484..67573077-chr11:71498421..71498985,2	HCT-116	colon:
6	chr11:3442224..3443750-chr11:71497854..71499382,2	MCF-7	breast:
7	chr11:71498340..71499087-chr19:18391666..18392636,2	Hela-S3	cervix:
8	chr11:71499803..71501328-chr11:71502237..71504426,2	K562	blood:
9	chr11:71349980..71350709-chr11:71511135..71512071,2	K562	blood:

No data

Variant related genes	Relation type
FAM86C1	TF binding region
FAM86C1	CpG island
ENSG00000244026	chromatin interactions
ENSG00000248671	chromatin interactions
ENSG00000166492	chromatin interactions
ENSG00000130522	chromatin interactions
ENSG00000160172	chromatin interactions
ENSG00000118894	chromatin interactions

Extended variants
information (count: 1005 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:1005 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12786239	chr11:71498562-71498563	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs12788471	chr11:71498567-71498568	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs189648565	chr11:71498569-71498570	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs180789170	chr11:71498578-71498579	Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs200393321	chr11:71498587-71498588	Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs12270466	chr11:71498591-71498592	Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs12283300	chr11:71498601-71498602	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs557487411	chr11:71498623-71498624	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs34702231	chr11:71498636-71498637	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs12277291	chr11:71498648-71498649	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs35109270	chr11:71498657-71498658	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs535728045	chr11:71498661-71498662	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs12283346	chr11:71498671-71498672	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs572072020	chr11:71498685-71498686	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs11234942	chr11:71498694-71498695	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs557806487	chr11:71498702-71498703	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs375753901	chr11:71498763-71498764	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs576178514	chr11:71498771-71498772	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs543596115	chr11:71498782-71498783	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs34076970	chr11:71498826-71498827	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs561694708	chr11:71498865-71498866	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs186708274	chr11:71498867-71498868	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs540940080	chr11:71498868-71498869	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs559614644	chr11:71498878-71498879	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs11234943	chr11:71498880-71498881	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs190108203	chr11:71498892-71498893	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs563362203	chr11:71498901-71498902	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs11234944	chr11:71498902-71498903	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs531991627	chr11:71498911-71498912	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs181678084	chr11:71498923-71498924	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs367665207	chr11:71498955-71498956	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs9734986	chr11:71498969-71498970	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs61889008	chr11:71498984-71498985	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs185917759	chr11:71498991-71498992	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs11234947	chr11:71499030-71499031	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs191079008	chr11:71499084-71499085	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs551167138	chr11:71499118-71499119	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs539442381	chr11:71499130-71499131	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs1814921	chr11:71499193-71499194	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs527279525	chr11:71499195-71499196	Active TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs4080974	chr11:71499206-71499207	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs4080975	chr11:71499230-71499231	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs55774559	chr11:71499248-71499249	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs1814922	chr11:71499280-71499281	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs541254766	chr11:71499284-71499285	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs367806642	chr11:71499309-71499310	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs553283691	chr11:71499397-71499398	Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs200423758	chr11:71499422-71499423	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs578033200	chr11:71499434-71499435	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs545329597	chr11:71499505-71499506	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Glioblastoma multiforme	21080181	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chordoma	21602918	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Breast cancer	16620391	CNVD
Multiple myeloma	17550852	CNVD
Neuroblastoma	18923191	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Multiple myeloma	16616336	CNVD
Urothelial cell carcinoma	18451213	CNVD
Leukoplakia	24403051	CNVD
Prostate cancer	17217626	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	17142309	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:497 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71496800-71499200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:71497000-71499400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr11:71497200-71498600	Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr11:71497200-71498600	Active TSS	Stomach Smooth Muscle	stomach
5	chr11:71497200-71498800	Active TSS	Fetal Muscle Leg	muscle
6	chr11:71497200-71498800	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr11:71497200-71498800	Active TSS	NH-A	brain
8	chr11:71497200-71499000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:71497200-71499000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:71497200-71499000	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr11:71497200-71499000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:71497200-71499000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:71497200-71499000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:71497200-71499000	Active TSS	Duodenum Mucosa	Duodenum
15	chr11:71497200-71499000	Active TSS	Fetal Brain Female	brain
16	chr11:71497200-71499000	Active TSS	NHEK	skin
17	chr11:71497200-71499200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:71497200-71499200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:71497200-71499200	Active TSS	Brain Anterior Caudate	brain
20	chr11:71497200-71499200	Active TSS	Brain Cingulate Gyrus	brain
21	chr11:71497200-71499200	Active TSS	Fetal Lung	lung
22	chr11:71497200-71499200	Active TSS	Thymus	Thymus
23	chr11:71497200-71499400	Active TSS	H9 Cell Line	embryonic stem cell
24	chr11:71497200-71499400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:71497200-71499400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr11:71497200-71499400	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr11:71497200-71499400	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr11:71497200-71499400	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr11:71497200-71499400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:71497200-71499400	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr11:71497200-71499400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:71497200-71499400	Active TSS	Rectal Smooth Muscle	rectum
33	chr11:71497200-71499400	Active TSS	A549	lung
34	chr11:71497200-71499600	Active TSS	H1 Cell Line	embryonic stem cell
35	chr11:71497200-71499600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:71497200-71499600	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr11:71497200-71499600	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr11:71497200-71499600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:71497200-71499600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:71497200-71499600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:71497200-71499600	Active TSS	HepG2	liver
42	chr11:71497200-71499800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:71497400-71498600	Active TSS	Primary hematopoietic stem cells	blood
44	chr11:71497400-71498800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:71497400-71498800	Active TSS	Placenta Amnion	Placenta Amnion
46	chr11:71497400-71499000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:71497400-71499000	Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr11:71497400-71499000	Active TSS	Aorta	Aorta
49	chr11:71497400-71499000	Active TSS	Liver	Liver
50	chr11:71497400-71499000	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links