Variant report

Variant	nsv482283
Chromosome Location	chrX:58356054-58564667
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:132994674..132995196-chrX:58560687..58561212,3	MCF-7	breast:
2	chr9:66822656..66823493-chrX:58560878..58561539,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZXDA-3	chrX:58561375-58561549	NONHSAT137294
2	lnc-ZXDA-3	chrX:58556388-58556431	NONHSAT137294

Extended variants
information (count: 6139 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:6139 , 50 per page) page: 1 2 3 4 5 6 7 ... 123

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191191852	chrX:58356068-58356069	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs182519125	chrX:58356094-58356095	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs147346520	chrX:58356096-58356097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs187117981	chrX:58356108-58356109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs192022223	chrX:58356131-58356132	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs575374146	chrX:58356160-58356161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs182934899	chrX:58356180-58356181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs188941801	chrX:58356190-58356191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs148594648	chrX:58356238-58356239	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs542706981	chrX:58356245-58356246	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs193100461	chrX:58356249-58356250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs142969702	chrX:58356278-58356279	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs377724170	chrX:58356279-58356280	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs184273958	chrX:58356314-58356315	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs575217190	chrX:58356346-58356347	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs187559951	chrX:58356409-58356410	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs1114122	chrX:58356417-58356418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs7881618	chrX:58356449-58356450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs139830325	chrX:58356507-58356508	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs184076508	chrX:58356528-58356529	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs112370943	chrX:58356542-58356543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs188745643	chrX:58356544-58356545	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs367826753	chrX:58356568-58356569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs181519373	chrX:58356629-58356630	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs374352335	chrX:58356666-58356667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs140530905	chrX:58356686-58356687	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs185194769	chrX:58356718-58356719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs190474279	chrX:58356725-58356726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs182067712	chrX:58356734-58356735	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs187668808	chrX:58356742-58356743	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs371267234	chrX:58356779-58356780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs6611668	chrX:58356798-58356799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs6612920	chrX:58356837-58356838	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs367732655	chrX:58356877-58356878	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs79093539	chrX:58356885-58356886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs371306065	chrX:58356890-58356891	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs189634021	chrX:58356909-58356910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs74665300	chrX:58356910-58356911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs74755424	chrX:58356937-58356938	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs180965108	chrX:58357033-58357034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs112175438	chrX:58357065-58357066	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs113457768	chrX:58357071-58357072	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs113850897	chrX:58357082-58357083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs113715402	chrX:58357087-58357088	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs12396645	chrX:58357109-58357110	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs73516571	chrX:58357172-58357173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs190188355	chrX:58357213-58357214	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs182721505	chrX:58357256-58357257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs371999584	chrX:58357285-58357286	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs542216146	chrX:58357401-58357402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Cancer	21637783	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Cancer	16751803	CNVD
Intellectual disability	23615299	CNVD
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	22286061	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Cancer	20164919	CNVD
Thyroid cancer	19087340	CNVD
lymphocytic leukemia	21291569	CNVD
Cervical cancer	21062161	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:597 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:58355000-58357600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chrX:58355800-58356400	ZNF genes & repeats	Liver	Liver
3	chrX:58357800-58359400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chrX:58359200-58369400	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chrX:58361000-58366400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chrX:58361400-58368800	ZNF genes & repeats	Liver	Liver
7	chrX:58362600-58367600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chrX:58363600-58366400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chrX:58371400-58374400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chrX:58377600-58378000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:58379000-58383600	ZNF genes & repeats	Liver	Liver
12	chrX:58379800-58392400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chrX:58380600-58382000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chrX:58383600-58389800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chrX:58385600-58392600	ZNF genes & repeats	Liver	Liver
16	chrX:58388000-58390000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chrX:58388600-58392000	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chrX:58388800-58389800	Weak transcription	HUVEC	blood vessel
19	chrX:58394000-58397200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
20	chrX:58395400-58398400	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chrX:58395800-58398400	ZNF genes & repeats	Liver	Liver
22	chrX:58396000-58400200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chrX:58398000-58398400	ZNF genes & repeats	Dnd41	blood
24	chrX:58398000-58398400	ZNF genes & repeats	Osteobl	bone
25	chrX:58400800-58409800	ZNF genes & repeats	Liver	Liver
26	chrX:58402000-58409600	ZNF genes & repeats	Adipose Nuclei	Adipose
27	chrX:58407000-58416600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chrX:58408600-58409800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chrX:58408800-58409000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chrX:58409000-58409200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chrX:58409200-58415200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chrX:58411400-58418400	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chrX:58413200-58423200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chrX:58414800-58416800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chrX:58415200-58416400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chrX:58415400-58416200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chrX:58415400-58416400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
38	chrX:58415400-58418200	ZNF genes & repeats	Liver	Liver
39	chrX:58415800-58416400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
40	chrX:58416000-58416200	ZNF genes & repeats	Brain Hippocampus Middle	brain
41	chrX:58416000-58416400	ZNF genes & repeats	Brain Angular Gyrus	brain
42	chrX:58416000-58416400	ZNF genes & repeats	Hela-S3	cervix
43	chrX:58416000-58416400	ZNF genes & repeats	HepG2	liver
44	chrX:58416000-58416400	ZNF genes & repeats	HSMMtube	muscle
45	chrX:58416000-58416400	ZNF genes & repeats	HUVEC	blood vessel
46	chrX:58416000-58416400	ZNF genes & repeats	NH-A	brain
47	chrX:58416000-58416400	ZNF genes & repeats	NHEK	skin
48	chrX:58416000-58416400	Active TSS	NHLF	lung
49	chrX:58416000-58416400	ZNF genes & repeats	Osteobl	bone
50	chrX:58418800-58419600	ZNF genes & repeats	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links