Variant report

Variant	nsv482641
Chromosome Location	chr9:86398152-86587957
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3583)
CpG islands
(count:1344)
Chromatin interactive
region (count:101)
LncRNA
region (count:54)
Mature miRNA
region (count: 2)
miRNA target
sites (count:2)

(count:3583 , 50 per page) page: 1 2 3 4 5 6 7 ... 72

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:86579582-86579944	K562	blood:	n/a	n/a
2	ARID3A	chr9:86581470-86581472	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:86574100-86574109	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:86535494-86536921	HepG2	liver:	n/a	n/a
5	ARID3A	chr9:86571380-86571827	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:86578453-86578585	HepG2	liver:	n/a	n/a
7	ARID3A	chr9:86500378-86500758	HepG2	liver:	n/a	n/a
8	ATF1	chr9:86579533-86579865	K562	blood:	n/a	n/a
9	ATF2	chr9:86535464-86536111	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr9:86579550-86580178	GM12878	blood:	n/a	n/a
11	ATF2	chr9:86580506-86581613	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr9:86580548-86581216	GM12878	blood:	n/a	n/a
13	ATF2	chr9:86579548-86580083	GM12878	blood:	n/a	n/a
14	ATF2	chr9:86535356-86536066	GM12878	blood:	n/a	n/a
15	ATF2	chr9:86535487-86536085	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr9:86580202-86581672	GM12878	blood:	n/a	n/a
17	ATF2	chr9:86535405-86536155	GM12878	blood:	n/a	n/a
18	ATF2	chr9:86581755-86582464	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF3	chr9:86500485-86500713	K562	blood:	n/a	n/a
20	ATF3	chr9:86577106-86577655	HCT-116	colon:	n/a	n/a
21	ATF3	chr9:86500470-86500690	HepG2	liver:	n/a	n/a
22	BACH1	chr9:86535776-86536716	H1-hESC	embryonic stem cell:	n/a	n/a
23	BATF	chr9:86464911-86465156	GM12878	blood:	n/a	n/a
24	BATF	chr9:86535650-86536027	GM12878	blood:	n/a	n/a
25	BATF	chr9:86547853-86548109	GM12878	blood:	n/a	n/a
26	BATF	chr9:86547907-86548108	GM12878	blood:	n/a	n/a
27	BCL11A	chr9:86464843-86465149	GM12878	blood:	n/a	n/a
28	BCL11A	chr9:86535614-86536076	GM12878	blood:	n/a	n/a
29	BCL11A	chr9:86535684-86536658	GM12878	blood:	n/a	chr9:86536409-86536422 chr9:86536253-86536266
30	BCL3	chr9:86579866-86580224	GM12878	blood:	n/a	n/a
31	BCL3	chr9:86580474-86581386	GM12878	blood:	n/a	n/a
32	BCL3	chr9:86535616-86536060	GM12878	blood:	n/a	n/a
33	BCL3	chr9:86579349-86579667	GM12878	blood:	n/a	n/a
34	BCL3	chr9:86579408-86581369	A549	lung:	n/a	n/a
35	BCL3	chr9:86579562-86580425	K562	blood:	n/a	n/a
36	BCL3	chr9:86580322-86582517	K562	blood:	n/a	n/a
37	BCL3	chr9:86580540-86581367	K562	blood:	n/a	n/a
38	BCL3	chr9:86580385-86581050	A549	lung:	n/a	n/a
39	BCL3	chr9:86540372-86540633	GM12878	blood:	n/a	n/a
40	BCL3	chr9:86579986-86580447	GM12878	blood:	n/a	n/a
41	BCL3	chr9:86579835-86580381	A549	lung:	n/a	n/a
42	BCL3	chr9:86580482-86581059	GM12878	blood:	n/a	n/a
43	BCLAF1	chr9:86535428-86536097	GM12878	blood:	n/a	n/a
44	BCLAF1	chr9:86579327-86581454	GM12878	blood:	n/a	n/a
45	BCLAF1	chr9:86570923-86571407	GM12878	blood:	n/a	n/a
46	BCLAF1	chr9:86535622-86536069	K562	blood:	n/a	n/a
47	BCLAF1	chr9:86579601-86581565	GM12878	blood:	n/a	n/a
48	BCLAF1	chr9:86536317-86536801	GM12878	blood:	n/a	chr9:86536409-86536422
49	BCLAF1	chr9:86535488-86536083	K562	blood:	n/a	n/a
50	BCLAF1	chr9:86536451-86536976	GM12878	blood:	n/a	n/a

(count:1344 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:86432031-86432081	NB4	blood:	n/a
2	chr9:86571409-86571459	SK-N-MC	brain:	n/a
3	chr9:86432031-86432081	NB4	blood:	n/a
4	chr9:86571409-86571459	SK-N-MC	brain:	n/a
5	chr9:86569098-86569148	HL-60	blood:	n/a
6	chr9:86433081-86433131	GM19239	blood:	n/a
7	chr9:86572014-86572064	NH-A	brain:	n/a
8	chr9:86431343-86431393	AoSMC	blood vessel:	n/a
9	chr9:86536513-86536563	HPAEpiC	pulmonary alveolar:	n/a
10	chr9:86432031-86432081	GM12891	blood:	n/a
11	chr9:86536043-86536093	HEEpiC	esophagus:	n/a
12	chr9:86433764-86433814	HRE	kidney:	n/a
13	chr9:86535695-86535745	K562	blood:	n/a
14	chr9:86535695-86535745	NT2-D1	testis:	n/a
15	chr9:86431343-86431393	HCT-116	colon:	n/a
16	chr9:86571814-86571864	HepG2	liver:	n/a
17	chr9:86432031-86432081	ECC-1	luminal epithelium:	n/a
18	chr9:86567743-86567793	BE2_C	brain:	n/a
19	chr9:86536513-86536563	ProgFib	skin:	n/a
20	chr9:86571585-86571635	SK-N-SH_RA	brain:	n/a
21	chr9:86535755-86535805	LNCaP	prostate:	n/a
22	chr9:86432031-86432081	HNPCEpiC	eye:	n/a
23	chr9:86433081-86433131	IMR90	lung:	fetal
24	chr9:86535755-86535805	HAEpiC	amniotic membrane:	n/a
25	chr9:86571904-86571954	BE2_C	brain:	n/a
26	chr9:86536513-86536563	GM19239	blood:	n/a
27	chr9:86432031-86432081	IMR90	lung:	fetal
28	chr9:86571409-86571459	AG09309	skin:	n/a
29	chr9:86433081-86433131	AG04449	skin:	fetal
30	chr9:86571814-86571864	HRCEpiC	kidney:	n/a
31	chr9:86536028-86536078	NT2-D1	testis:	n/a
32	chr9:86571904-86571954	NHBE	bronchial:	n/a
33	chr9:86481663-86481713	HCF	heart:	n/a
34	chr9:86572014-86572064	U87	brain:	n/a
35	chr9:86573761-86573811	ovcar-3	ovarian:	n/a
36	chr9:86481663-86481713	ProgFib	skin:	n/a
37	chr9:86536513-86536563	NB4	blood:	n/a
38	chr9:86431343-86431393	BE2_C	brain:	n/a
39	chr9:86535695-86535745	LNCaP	prostate:	n/a
40	chr9:86535695-86535745	Hela-S3	cervix:	n/a
41	chr9:86569098-86569148	ovcar-3	ovarian:	n/a
42	chr9:86535755-86535805	CMK	blood:	n/a
43	chr9:86481663-86481713	NHDF-neo	bronchial:	n/a
44	chr9:86569098-86569148	HAEpiC	amniotic membrane:	n/a
45	chr9:86536028-86536078	Caco-2	colon:	n/a
46	chr9:86535695-86535745	HRE	kidney:	n/a
47	chr9:86481663-86481713	MCF10A-Er-Src	breast:	n/a
48	chr9:86432854-86432904	H1-hESC	embryonic stem cell:	embryo
49	chr9:86536043-86536093	GM19239	blood:	n/a
50	chr9:86567743-86567793	HNPCEpiC	eye:	n/a

(count:101 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:86534561..86538164-chr9:86570673..86573880,3	K562	blood:
2	chr5:110848126..110849104-chr9:86535767..86536636,2	Hela-S3	cervix:
3	chr9:86398629..86401211-chr9:86410405..86412819,2	MCF-7	breast:
4	chr9:86554424..86556839-chr9:86571104..86572996,2	MCF-7	breast:
5	chr9:86237271..86239294-chr9:86534482..86537409,3	MCF-7	breast:
6	chr9:86561198..86563897-chr9:86600302..86603108,2	MCF-7	breast:
7	chr9:86321345..86324567-chr9:86398481..86402531,5	MCF-7	breast:
8	chr7:98922926..98923573-chr9:86571634..86572370,2	Hela-S3	cervix:
9	chr9:86321555..86324208-chr9:86431445..86433817,2	MCF-7	breast:
10	chr9:86430622..86432919-chr9:86535075..86537489,2	MCF-7	breast:
11	chr9:86548960..86550790-chr9:86568981..86570981,2	MCF-7	breast:
12	chr9:86566614..86568645-chr9:86588942..86591883,2	K562	blood:
13	chr9:86536152..86538297-chr9:86540828..86543846,3	MCF-7	breast:
14	chr1:28974640..28975500-chr9:86535654..86536400,2	Hela-S3	cervix:
15	chr9:86552479..86553254-chr9:86875743..86876720,3	K562	blood:
16	chr9:86561645..86563612-chr9:86594555..86596170,2	MCF-7	breast:
17	chr9:86569929..86574114-chr9:86574225..86577710,5	MCF-7	breast:
18	chr9:86552677..86553242-chr9:86929937..86930812,2	K562	blood:
19	chr9:86533593..86537892-chr9:86593047..86598677,10	K562	blood:
20	chr9:86451626..86452376-chr9:86520762..86521311,2	MCF-7	breast:
21	chr9:86431003..86433746-chr9:86534377..86536332,2	K562	blood:
22	chr9:86550607..86552795-chr9:86930808..86933198,2	MCF-7	breast:
23	chr9:86411947..86414043-chr9:86595098..86597695,2	MCF-7	breast:
24	chr9:86321564..86323208-chr9:86572109..86574436,2	MCF-7	breast:
25	chr9:86430622..86432919-chr9:86535075..86537489,2	MCF-7	breast:
26	chr9:86398629..86401211-chr9:86410405..86412819,2	MCF-7	breast:
27	chr9:86534561..86538761-chr9:86547777..86551990,5	MCF-7	breast:
28	chr9:86557117..86561082-chr9:86568823..86572944,4	MCF-7	breast:
29	chr9:86551814..86552501-chr9:86930023..86930750,2	MCF-7	breast:
30	chr9:86562110..86564008-chr9:86566569..86568796,2	K562	blood:
31	chr9:86534003..86537844-chr9:86570557..86574103,8	K562	blood:
32	chr9:86551919..86553846-chr9:86578831..86580851,2	K562	blood:
33	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:
34	chr9:86543303..86546156-chr9:86594809..86597216,2	K562	blood:
35	chr9:86535234..86536021-chr9:86875727..86876675,2	MCF-7	breast:
36	chr9:86507562..86509693-chr9:86509764..86511267,2	K562	blood:
37	chr9:86555752..86558711-chr9:86579434..86581068,2	K562	blood:
38	chr9:86549593..86551703-chr9:86556254..86557805,2	MCF-7	breast:
39	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:
40	chr9:86541635..86544345-chr9:86665548..86667347,2	K562	blood:
41	chr9:86570737..86572270-chr9:86573976..86575561,2	K562	blood:
42	chr9:86529939..86532744-chr9:86534062..86535993,2	MCF-7	breast:
43	chr9:86554343..86556289-chr9:86570141..86571960,2	MCF-7	breast:
44	chr9:86394932..86396810-chr9:86405282..86407536,2	MCF-7	breast:
45	chr9:86535600..86536226-chr9:86875793..86876638,2	K562	blood:
46	chr9:86533979..86537502-chr9:86594012..86596999,11	MCF-7	breast:
47	chr9:86249075..86251124-chr9:86419195..86422058,2	K562	blood:
48	chr9:86321248..86324502-chr9:86534491..86537588,5	MCF-7	breast:
49	chr9:86321607..86323730-chr9:86445405..86447358,2	MCF-7	breast:
50	chr9:86562055..86565176-chr9:86569672..86571834,3	MCF-7	breast:

(count:54 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RMI1-5	chr9:86452587-86452776	ENSG00000226877.3
2	lnc-RMI1-5	chr9:86464323-86464506	ENSG00000231616.4
3	lnc-RMI1-5	chr9:86463725-86463870	ENSG00000231616.4
4	lnc-RMI1-5	chr9:86446480-86446527	ENSG00000226877.1
5	lnc-RMI1-6	chr9:86435226-86435354	NONHSAT132748
6	lnc-RMI1-5	chr9:86446478-86446527	ENSG00000226877.3
7	lnc-RMI1-5	chr9:86474193-86474240	ENSG00000231616.4
8	lnc-RMI1-5	chr9:86463753-86463870	ENSG00000231616.4
9	lnc-RMI1-5	chr9:86450466-86450620	ENSG00000226877.1
10	lnc-RMI1-5	chr9:86462573-86462823	ENSG00000231616.4
11	lnc-RMI1-6	chr9:86442823-86443094	NONHSAT132748
12	lnc-RMI1-6	chr9:86433316-86433488	ENSG00000245608
13	lnc-RMI1-5	chr9:86446475-86446527	ENSG00000226877.1
14	lnc-KIF27-1	chr9:86432900-86433036	NONHSAT132747
15	lnc-RMI1-6	chr9:86434721-86434785	NONHSAT132748
16	lnc-RMI1-5	chr9:86464287-86464506	ENSG00000231616.4
17	lnc-RMI1-5	chr9:86452587-86452779	ENSG00000226877.1
18	lnc-RMI1-5	chr9:86451945-86452058	ENSG00000226877.1
19	lnc-RMI1-6	chr9:86434721-86434785	ENSG00000245608
20	lnc-RMI1-6	chr9:86434446-86434617	ENSG00000245608
21	lnc-RMI1-5	chr9:86445783-86445854	ENSG00000226877.1
22	lnc-RMI1-5	chr9:86451945-86452058	ENSG00000226877.3
23	lnc-RMI1-5	chr9:86474193-86474240	ENSG00000231616.4
24	lnc-RMI1-5	chr9:86469971-86470092	ENSG00000231616.4
25	lnc-RMI1-5	chr9:86474492-86474795	ENSG00000231616.4
26	lnc-RMI1-5	chr9:86452323-86452502	ENSG00000226877.1
27	lnc-RMI1-5	chr9:86473779-86474070	ENSG00000231616.4
28	lnc-RMI1-5	chr9:86464287-86464506	ENSG00000231616.4
29	lnc-RMI1-5	chr9:86473893-86474075	ENSG00000231616.4
30	lnc-RMI1-5	chr9:86474492-86475013	ENSG00000231616.4
31	lnc-RMI1-5	chr9:86473779-86474069	ENSG00000231616.4
32	lnc-RMI1-6	chr9:86434446-86434617	NONHSAT132748
33	lnc-RMI1-5	chr9:86482629-86483335	ENSG00000231616.4
34	lnc-RMI1-5	chr9:86474193-86474240	ENSG00000231616.4
35	lnc-RMI1-5	chr9:86474193-86474250	ENSG00000231616.4
36	lnc-RMI1-6	chr9:86432881-86432983	NONHSAT132748
37	lnc-RMI1-1	chr9:86587148-86587192	ENSG00000235298.1
38	lnc-RMI1-5	chr9:86452323-86452500	ENSG00000226877.1
39	lnc-RMI1-5	chr9:86474193-86474250	ENSG00000231616.4
40	lnc-RMI1-5	chr9:86473893-86474075	ENSG00000231616.4
41	lnc-RMI1-6	chr9:86435226-86435354	ENSG00000245608
42	lnc-KIF27-1	chr9:86431911-86432042	NONHSAT132747
43	lnc-RMI1-5	chr9:86473216-86474075	ENSG00000231616.4
44	lnc-RMI1-5	chr9:86463801-86463870	ENSG00000231616.4
45	lnc-RMI1-5	chr9:86444571-86444630	ENSG00000226877.1
46	lnc-RMI1-5	chr9:86473756-86474075	ENSG00000231616.4
47	lnc-RMI1-5	chr9:86482629-86483154	ENSG00000231616.4
48	lnc-RMI1-5	chr9:86446478-86446527	ENSG00000226877.1
49	lnc-RMI1-6	chr9:86433316-86433488	NONHSAT132748
50	lnc-RMI1-6	chr9:86442823-86443087	ENSG00000245608

miRNA name	Chromosome Location	mirBase accession
hsa-miR-7-5p	chr9:86584727-86584749	MIMAT0000252_2
hsa-miR-7-1-3p	chr9:86584686-86584707	MIMAT0004553

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	HNRNPK	hsa-miR-21-5p	chr9:86583583-86583604
2	HNRNPK	hsa-miR-30c-5p	chr9:86584206-86584228

Variant related genes	Relation type
KIF27	TF binding region
C9orf64	TF binding region
MIR7-1	TF binding region
ENSG00000226877	TF binding region
ENSG00000231616	TF binding region
GKAP1	TF binding region
HNRNPK	TF binding region
ENSG00000235298	TF binding region
KIF27	CpG island
C9orf64	CpG island
MIR7-1	CpG island
ENSG00000226877	CpG island
ENSG00000231616	CpG island
GKAP1	CpG island
HNRNPK	CpG island
ENSG00000235298	CpG island
ENSG00000165115	chromatin interactions
ENSG00000136950	chromatin interactions
ENSG00000166192	chromatin interactions
ENSG00000254473	chromatin interactions
ENSG00000197506	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000165119	chromatin interactions
ENSG00000143164	chromatin interactions
ENSG00000226877	chromatin interactions
ENSG00000182809	chromatin interactions
ENSG00000148057	chromatin interactions
ENSG00000241685	chromatin interactions
ENSG00000164211	chromatin interactions
ENSG00000135018	chromatin interactions
ENSG00000066933	chromatin interactions
ENSG00000165118	chromatin interactions
ENSG00000143158	chromatin interactions
ENSG00000178966	chromatin interactions
ENSG00000223247	chromatin interactions
ENSG00000165113	chromatin interactions
ENSG00000270103	chromatin interactions
ENSG00000202523	chromatin interactions
ENSG00000164081	chromatin interactions
CTC1	Mature miRNA region
CIRH1A	Mature miRNA region
ZNF792	Mature miRNA region
TBC1D1	Mature miRNA region
CDC5L	Mature miRNA region
HUWE1	Mature miRNA region
SMS	Mature miRNA region
PDS5B	miRNA target sites
RNF182	miRNA target sites
FAM49B	miRNA target sites
RUNX1	miRNA target sites

Extended variants
information (count: 7064 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:7064 , 50 per page) page: 1 2 3 4 5 6 7 ... 142

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139775829	chr9:86398171-86398172	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs529091744	chr9:86398202-86398203	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs545971391	chr9:86398203-86398204	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547538002	chr9:86398239-86398240	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4877810	chr9:86398311-86398312	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs142961796	chr9:86398324-86398325	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530733126	chr9:86398340-86398341	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551002378	chr9:86398346-86398347	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs78790265	chr9:86398376-86398377	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536602333	chr9:86398392-86398393	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376468780	chr9:86398441-86398442	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377622875	chr9:86398466-86398467	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs555180514	chr9:86398494-86398495	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs573647424	chr9:86398566-86398567	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs7874436	chr9:86398605-86398606	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs73480181	chr9:86398626-86398627	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs150723767	chr9:86398634-86398635	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs375407195	chr9:86398651-86398652	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs7874454	chr9:86398682-86398683	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs564521025	chr9:86398696-86398697	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs576512152	chr9:86398784-86398785	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs543803069	chr9:86398817-86398818	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs138991533	chr9:86398830-86398831	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs149905057	chr9:86398852-86398853	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs540901312	chr9:86398853-86398854	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs559489763	chr9:86398868-86398869	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs533101937	chr9:86398895-86398896	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs200143300	chr9:86398896-86398897	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs12344567	chr9:86398901-86398902	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs569575730	chr9:86398940-86398941	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs530009959	chr9:86398989-86398990	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs112265247	chr9:86399007-86399008	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs113488771	chr9:86399010-86399011	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs142621722	chr9:86399018-86399019	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs548936552	chr9:86399020-86399021	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs567280866	chr9:86399074-86399075	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs191788630	chr9:86399075-86399076	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs554113942	chr9:86399085-86399086	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs566276683	chr9:86399086-86399087	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs183125907	chr9:86399101-86399102	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs539995806	chr9:86399106-86399107	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs116058677	chr9:86399113-86399114	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs73480183	chr9:86399114-86399115	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs563967021	chr9:86399116-86399117	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs115591637	chr9:86399184-86399185	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs75368322	chr9:86399188-86399189	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs12344699	chr9:86399335-86399336	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs574090706	chr9:86399338-86399339	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs541511114	chr9:86399343-86399344	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs147600434	chr9:86399349-86399350	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	22522925	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2866 , 50 per page) page: 1 2 3 4 5 6 7 ... 58

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86350800-86407000	Weak transcription	Primary B cells from cord blood	blood
4	chr9:86352000-86411800	Weak transcription	Ovary	ovary
5	chr9:86352600-86398200	Weak transcription	Fetal Brain Female	brain
6	chr9:86353000-86432000	Weak transcription	Lung	lung
7	chr9:86357800-86398800	Weak transcription	Pancreas	Pancrea
8	chr9:86363800-86412400	Weak transcription	HepG2	liver
9	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:86364800-86412000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:86364800-86413400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:86367000-86413600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:86367400-86411800	Weak transcription	Brain Substantia Nigra	brain
14	chr9:86367600-86412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:86368000-86398200	Weak transcription	Left Ventricle	heart
16	chr9:86368000-86398800	Weak transcription	Aorta	Aorta
17	chr9:86373200-86411800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:86377000-86412600	Weak transcription	Brain Anterior Caudate	brain
19	chr9:86377200-86432000	Weak transcription	Gastric	stomach
20	chr9:86378200-86398200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:86378400-86418400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:86379600-86398800	Weak transcription	Thymus	Thymus
23	chr9:86380200-86431600	Weak transcription	Fetal Kidney	kidney
24	chr9:86381400-86411800	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:86383600-86425800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:86385400-86409200	Weak transcription	Primary T cells from cord blood	blood
27	chr9:86386400-86398800	Weak transcription	Fetal Thymus	thymus
28	chr9:86388000-86398800	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:86388200-86398200	Weak transcription	Fetal Intestine Large	intestine
30	chr9:86388200-86411400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:86389000-86398800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:86389000-86431600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:86389200-86400200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr9:86390200-86398800	Weak transcription	Right Ventricle	heart
35	chr9:86391800-86398800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:86391800-86411800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr9:86392000-86431600	Weak transcription	Psoas Muscle	Psoas
38	chr9:86392000-86431800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:86393400-86412000	Weak transcription	Brain Angular Gyrus	brain
40	chr9:86393600-86412400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:86393800-86398800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr9:86394400-86398800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:86394400-86431600	Weak transcription	Colon Smooth Muscle	Colon
44	chr9:86394800-86412600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:86395000-86416400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:86395600-86399000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:86395600-86417400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:86396600-86403400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr9:86397000-86399400	Strong transcription	Fetal Intestine Small	intestine
50	chr9:86397000-86399400	Strong transcription	Fetal Stomach	stomach

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