Variant report

Variant	nsv492274
Chromosome Location	chr9:11530555-12074235
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:11701463..11703909-chr9:11703963..11706145,2	K562	blood:
2	chr9:11653547..11655405-chr9:11656471..11658764,2	K562	blood:
3	chr9:11653547..11655405-chr9:11656471..11658764,2	K562	blood:
4	chr9:11687941..11690802-chr9:11691495..11694345,3	K562	blood:
5	chr9:11701463..11703909-chr9:11703963..11706145,2	K562	blood:
6	chr9:11687941..11690802-chr9:11691495..11694345,3	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRD-10	chr9:11819221-11819360	l_3733_chr9:11816028-11824988_testes
2	lnc-PTPRD-10	chr9:11824674-11824988	l_3733_chr9:11816028-11824988_testes
3	lnc-PTPRD-5	chr9:11822678-11822704	XLOC_007647
4	lnc-PTPRD-5	chr9:11834674-11834959	XLOC_007647
5	lnc-PTPRD-5	chr9:11829221-11829360	XLOC_007647
6	lnc-PTPRD-5	chr9:11829221-11829360	XLOC_007647
7	lnc-PTPRD-10	chr9:11816029-11816601	l_3733_chr9:11816028-11824988_testes
8	lnc-PTPRD-5	chr9:11829210-11829360	XLOC_007647
9	lnc-PTPRD-5	chr9:11834674-11834988	XLOC_007647
10	lnc-PTPRD-5	chr9:11834674-11834959	XLOC_007647
11	lnc-PTPRD-5	chr9:11826175-11826601	XLOC_007647

No data

Variant related genes	Relation type
CSF1	miRNA target sites
CUL5	miRNA target sites
FLOT2	miRNA target sites

Extended variants
information (count: 6504 )
Associated
traits (count: 112 )

Variant overlapped rSNPs/rCNVs (count:6504 , 50 per page) page: 1 2 3 4 5 6 7 ... 131

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76123289	chr9:11534680-11534681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs547402420	chr9:11534709-11534710	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs150394292	chr9:11534751-11534752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs570751926	chr9:11534765-11534766	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs188279982	chr9:11534767-11534768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs560221795	chr9:11534772-11534773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs138340918	chr9:11534782-11534783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs552030053	chr9:11534792-11534793	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs144543619	chr9:11534795-11534796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73644033	chr9:11534808-11534809	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs370671638	chr9:11534827-11534828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs374304500	chr9:11534829-11534830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs531265259	chr9:11534845-11534846	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs143092802	chr9:11534874-11534875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs568284652	chr9:11534890-11534891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs73405409	chr9:11534927-11534928	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs72700206	chr9:11535004-11535005	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs570551211	chr9:11535009-11535010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs563121093	chr9:11535010-11535011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs117783197	chr9:11535032-11535033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556237551	chr9:11535034-11535035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs576491260	chr9:11535035-11535036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530554760	chr9:11535054-11535055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138984908	chr9:11535068-11535069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192565038	chr9:11535167-11535168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574665098	chr9:11535169-11535170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540568695	chr9:11535208-11535209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs142140552	chr9:11535246-11535247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183737270	chr9:11535256-11535257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs188267652	chr9:11535271-11535272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs546741989	chr9:11535323-11535324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs199946242	chr9:11535324-11535325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs376811085	chr9:11535325-11535326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373609295	chr9:11535337-11535338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144497576	chr9:11535354-11535355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192013282	chr9:11535385-11535386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372246133	chr9:11535455-11535456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547952649	chr9:11535509-11535510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373686022	chr9:11535543-11535544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529322791	chr9:11535554-11535555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527868259	chr9:11535568-11535569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549366467	chr9:11535583-11535584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs184826204	chr9:11535621-11535622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs35602072	chr9:11535648-11535649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs115478572	chr9:11535712-11535713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs189295497	chr9:11535812-11535813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs367784011	chr9:11535878-11535879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs563153140	chr9:11535884-11535885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs73405412	chr9:11535909-11535910	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs10959898	chr9:11535934-11535935	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:112)

Disease	PMID	Source
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Cancer	20164920	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	18511947	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Renal cell carcinoma	21215367	CNVD
Schizophrenia	23813976	CNVD
Type 2 diabetes	21526130	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Chordoma	21215367	CNVD
Schizophrenia	20967226	CNVD
early-passage human iPS cells	21368824	CNVD
Williams Syndrome	20824207	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:215 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11534600-11535000	Enhancers	Fetal Brain Male	brain
2	chr9:11535000-11538200	Weak transcription	Fetal Brain Male	brain
3	chr9:11537800-11538800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:11538200-11538600	Enhancers	Fetal Brain Male	brain
5	chr9:11538600-11545600	Weak transcription	Fetal Brain Male	brain
6	chr9:11545600-11547000	Enhancers	Fetal Brain Male	brain
7	chr9:11545800-11546600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr9:11546000-11546800	Enhancers	Fetal Brain Female	brain
9	chr9:11546400-11546800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:11546600-11547600	Enhancers	Brain Germinal Matrix	brain
11	chr9:11549200-11550800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:11549200-11554400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:11553200-11553600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr9:11553200-11553600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:11553400-11553800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:11558200-11559000	Enhancers	Fetal Brain Male	brain
17	chr9:11559000-11560000	Weak transcription	Fetal Brain Male	brain
18	chr9:11560000-11560200	Enhancers	Fetal Brain Male	brain
19	chr9:11561800-11562800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:11567000-11567400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:11569600-11570600	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr9:11570600-11577400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr9:11577400-11577600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr9:11577600-11578000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr9:11578000-11578800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr9:11578800-11579400	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr9:11579400-11580000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr9:11580000-11580200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr9:11597200-11597600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr9:11611600-11611800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:11612600-11612800	Enhancers	Fetal Heart	heart
32	chr9:11618400-11618800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:11618600-11618800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:11625800-11627800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:11631200-11632200	Enhancers	Fetal Brain Male	brain
36	chr9:11631400-11632000	Enhancers	Fetal Brain Female	brain
37	chr9:11632000-11633000	Weak transcription	Fetal Brain Female	brain
38	chr9:11632200-11633200	Weak transcription	Fetal Brain Male	brain
39	chr9:11633000-11633200	Enhancers	Fetal Brain Female	brain
40	chr9:11633200-11633600	Enhancers	Fetal Brain Male	brain
41	chr9:11650200-11650600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:11656000-11656800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:11686800-11687400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:11696400-11696600	Enhancers	Fetal Brain Male	brain
45	chr9:11696600-11697800	Weak transcription	Fetal Brain Male	brain
46	chr9:11697800-11698400	Enhancers	Fetal Brain Male	brain
47	chr9:11698400-11701800	Weak transcription	Fetal Brain Male	brain
48	chr9:11698800-11701400	Enhancers	Fetal Brain Female	brain
49	chr9:11700600-11700800	Enhancers	Brain Angular Gyrus	brain
50	chr9:11700600-11701800	Enhancers	Brain Hippocampus Middle	brain

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