Variant report

Variant	nsv497995
Chromosome Location	chr6:80883701-81134991
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1279)
CpG islands
(count:183)
Chromatin interactive
region (count:66)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1279 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:80960103-80960713	K562	blood:	n/a	n/a
2	ATF1	chr6:80960135-80960584	K562	blood:	n/a	n/a
3	ATF2	chr6:80990294-80990691	GM12878	blood:	n/a	n/a
4	ATF2	chr6:80990201-80990642	GM12878	blood:	n/a	n/a
5	ATF2	chr6:80884866-80885349	GM12878	blood:	n/a	n/a
6	BACH1	chr6:81047978-81048274	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr6:80960116-80960337	K562	blood:	n/a	n/a
8	BACH1	chr6:81047866-81047969	K562	blood:	n/a	n/a
9	BACH1	chr6:80919301-80919474	K562	blood:	n/a	n/a
10	BATF	chr6:80919184-80919492	GM12878	blood:	n/a	n/a
11	BATF	chr6:80921078-80921323	GM12878	blood:	n/a	chr6:80921238-80921249
12	BATF	chr6:81092591-81092738	GM12878	blood:	n/a	n/a
13	BATF	chr6:80921032-80921408	GM12878	blood:	n/a	chr6:80921238-80921249
14	BATF	chr6:80990347-80990631	GM12878	blood:	n/a	chr6:80990462-80990473
15	BATF	chr6:80920375-80920760	GM12878	blood:	n/a	n/a
16	BATF	chr6:80960102-80960418	GM12878	blood:	n/a	chr6:80960260-80960271
17	BCL11A	chr6:80990332-80990558	GM12878	blood:	n/a	n/a
18	BHLHE40	chr6:80959870-80960572	K562	blood:	n/a	n/a
19	BHLHE40	chr6:80919262-80919407	GM12878	blood:	n/a	n/a
20	BRCA1	chr6:80892069-80892401	Hela-S3	cervix:	n/a	n/a
21	CBX3	chr6:81004146-81004522	K562	blood:	n/a	n/a
22	CBX3	chr6:81004263-81004454	K562	blood:	n/a	n/a
23	CBX3	chr6:80960053-80960576	K562	blood:	n/a	n/a
24	CCNT2	chr6:80959867-80960600	K562	blood:	n/a	n/a
25	CCNT2	chr6:80964499-80964698	K562	blood:	n/a	n/a
26	CCNT2	chr6:80923195-80923312	K562	blood:	n/a	n/a
27	CEBPB	chr6:80990133-80990616	IMR90	lung:	n/a	n/a
28	CEBPB	chr6:81001127-81001287	A549	lung:	n/a	n/a
29	CEBPB	chr6:80891371-80891933	MCF-7	breast:	n/a	chr6:80891590-80891603 chr6:80891592-80891603 chr6:80891590-80891601
30	CEBPB	chr6:80891435-80891659	A549	lung:	n/a	chr6:80891590-80891603 chr6:80891592-80891603 chr6:80891590-80891601
31	CEBPB	chr6:80946294-80946447	K562	blood:	n/a	n/a
32	CEBPB	chr6:80884842-80885277	IMR90	lung:	n/a	n/a
33	CEBPB	chr6:81066313-81066634	IMR90	lung:	n/a	chr6:81066452-81066465 chr6:81066452-81066463 chr6:81066454-81066465
34	CEBPB	chr6:81134265-81135586	IMR90	lung:	n/a	chr6:81135479-81135491 chr6:81135037-81135048 chr6:81135497-81135510 chr6:81135037-81135050 chr6:81135038-81135049 chr6:81135039-81135048
35	CEBPB	chr6:81051052-81051360	IMR90	lung:	n/a	chr6:81051065-81051076
36	CEBPB	chr6:80941520-80941714	HepG2	liver:	n/a	chr6:80941632-80941643
37	CEBPB	chr6:81066292-81066590	K562	blood:	n/a	chr6:81066452-81066465 chr6:81066452-81066463 chr6:81066454-81066465
38	CEBPB	chr6:80990213-80990782	GM12878	blood:	n/a	n/a
39	CEBPB	chr6:80891415-80891782	Hela-S3	cervix:	n/a	chr6:80891590-80891603 chr6:80891592-80891603 chr6:80891590-80891601
40	CEBPB	chr6:80966551-80966695	K562	blood:	n/a	n/a
41	CEBPB	chr6:81066381-81066581	A549	lung:	n/a	chr6:81066452-81066465 chr6:81066452-81066463 chr6:81066454-81066465
42	CEBPB	chr6:80903831-80904041	IMR90	lung:	n/a	n/a
43	CEBPB	chr6:81066326-81066613	Hela-S3	cervix:	n/a	chr6:81066452-81066465 chr6:81066452-81066463 chr6:81066454-81066465
44	CEBPB	chr6:80990280-80990593	K562	blood:	n/a	n/a
45	CEBPB	chr6:80891409-80891754	IMR90	lung:	n/a	chr6:80891590-80891603 chr6:80891592-80891603 chr6:80891590-80891601
46	CEBPB	chr6:80955857-80955872	K562	blood:	n/a	n/a
47	CEBPB	chr6:80915111-80915514	MCF-7	breast:	n/a	n/a
48	CEBPB	chr6:81134905-81135439	Hela-S3	cervix:	n/a	chr6:81135037-81135048 chr6:81135037-81135050 chr6:81135038-81135049 chr6:81135039-81135048
49	CEBPB	chr6:80885055-80885215	K562	blood:	n/a	n/a
50	CEBPB	chr6:80903900-80904150	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:80885001-80885051	AoSMC	blood vessel:	n/a
2	chr6:80885001-80885051	PFSK-1	brain:	n/a
3	chr6:80891364-80891414	RPTEC	kidney:	n/a
4	chr6:80891364-80891414	HL-60	blood:	n/a
5	chr6:81134616-81134666	SK-N-SH_RA	brain:	n/a
6	chr6:80885001-80885051	NHDF-neo	bronchial:	n/a
7	chr6:80891364-80891414	NHBE	bronchial:	n/a
8	chr6:80885001-80885051	PANC-1	pancreas:	n/a
9	chr6:81134616-81134666	HCF	heart:	n/a
10	chr6:80885001-80885051	SAEC	small airway:	n/a
11	chr6:80885001-80885051	AG09319	gingival:	n/a
12	chr6:81134616-81134666	HEEpiC	esophagus:	n/a
13	chr6:80885001-80885051	HCPEpiC	choroid plexus:	n/a
14	chr6:80891364-80891414	BJ	skin:	n/a
15	chr6:80885001-80885051	HNPCEpiC	eye:	n/a
16	chr6:80885001-80885051	HPAEpiC	pulmonary alveolar:	n/a
17	chr6:80885001-80885051	NHBE	bronchial:	n/a
18	chr6:80885001-80885051	A549	lung:	n/a
19	chr6:80891364-80891414	GM12892	blood:	n/a
20	chr6:81134616-81134666	HIPEpiC	eye:	n/a
21	chr6:80885001-80885051	ProgFib	skin:	n/a
22	chr6:80891364-80891414	HAEpiC	amniotic membrane:	n/a
23	chr6:81134616-81134666	MCF10A-Er-Src	breast:	n/a
24	chr6:80885001-80885051	SKMC	muscle:	n/a
25	chr6:80891364-80891414	ovcar-3	ovarian:	n/a
26	chr6:80891364-80891414	A549	lung:	n/a
27	chr6:81134616-81134666	AG04449	skin:	fetal
28	chr6:80885001-80885051	MCF-7	breast:	n/a
29	chr6:81134616-81134666	HRE	kidney:	n/a
30	chr6:81134616-81134666	AG04450	lung:	fetal
31	chr6:81134616-81134666	GM12878	blood:	n/a
32	chr6:80891364-80891414	ECC-1	luminal epithelium:	n/a
33	chr6:80891364-80891414	HCT-116	colon:	n/a
34	chr6:80885001-80885051	AG04449	skin:	fetal
35	chr6:81134616-81134666	HMEC	breast:	n/a
36	chr6:80891364-80891414	U87	brain:	n/a
37	chr6:80885001-80885051	GM06990	blood:	n/a
38	chr6:81134616-81134666	NB4	blood:	n/a
39	chr6:80891364-80891414	NB4	blood:	n/a
40	chr6:80891364-80891414	HUVEC	blood vessel:	n/a
41	chr6:80891364-80891414	Jurkat	blood:	n/a
42	chr6:80891364-80891414	HCM	heart:	n/a
43	chr6:80891364-80891414	MCF10A-Er-Src	breast:	n/a
44	chr6:80891364-80891414	GM12891	blood:	n/a
45	chr6:80891364-80891414	LNCaP	prostate:	n/a
46	chr6:80885001-80885051	SK-N-SH_RA	brain:	n/a
47	chr6:80891364-80891414	MCF-7	breast:	n/a
48	chr6:81134616-81134666	NT2-D1	testis:	n/a
49	chr6:80891364-80891414	HRPEpiC	eye:	n/a
50	chr6:80885001-80885051	AG09309	skin:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:80988206..80990029-chr6:80995524..80997784,2	K562	blood:
2	chr6:80979089..80982797-chr6:80991689..80993882,3	K562	blood:
3	chr6:81029449..81030983-chr6:81039020..81041203,2	MCF-7	breast:
4	chr6:81069036..81071236-chr6:81098177..81100852,2	K562	blood:
5	chr6:80967484..80970189-chr6:80971106..80972726,2	MCF-7	breast:
6	chr6:80951892..80954239-chr6:80973770..80975991,3	K562	blood:
7	chr6:80935860..80938788-chr6:80939449..80942433,2	K562	blood:
8	chr6:81007615..81010180-chr6:81012530..81014934,2	K562	blood:
9	chr6:81073810..81075490-chr6:81078179..81079720,2	K562	blood:
10	chr6:80956342..80959082-chr6:80970604..80972949,2	K562	blood:
11	chr6:81047988..81048553-chr6:81186140..81186935,2	MCF-7	breast:
12	chr6:81047806..81048624-chr6:81314824..81315362,2	MCF-7	breast:
13	chr6:80923846..80924785-chr6:81039854..81040458,2	MCF-7	breast:
14	chr6:80879254..80880915-chr6:80881613..80884278,2	MCF-7	breast:
15	chr6:80918332..80920585-chr6:80923073..80926052,2	MCF-7	breast:
16	chr6:80935860..80938788-chr6:80939449..80942433,2	K562	blood:
17	chr6:80995904..80998328-chr6:81013302..81015727,2	K562	blood:
18	chr6:80995904..80998328-chr6:81013302..81015727,2	K562	blood:
19	chr6:80842460..80842980-chr6:80923844..80924587,2	MCF-7	breast:
20	chr6:80923899..80926801-chr6:80928383..80930082,2	MCF-7	breast:
21	chr6:80873532..80876462-chr6:80884285..80886201,2	MCF-7	breast:
22	chr6:80923899..80926801-chr6:80928383..80930082,2	MCF-7	breast:
23	chr6:80873458..80875750-chr6:80890518..80893234,2	MCF-7	breast:
24	chr6:80959739..80962315-chr6:80965772..80968765,2	K562	blood:
25	chr6:80842428..80843336-chr6:81048460..81049369,2	MCF-7	breast:
26	chr6:81048632..81050136-chr6:81059450..81061569,2	K562	blood:
27	chr6:81048632..81050136-chr6:81059450..81061569,2	K562	blood:
28	chr6:81073810..81075490-chr6:81078179..81079720,2	K562	blood:
29	chr6:80888084..80890010-chr6:80891656..80894939,3	K562	blood:
30	chr6:80981011..80983271-chr6:80984056..80985676,2	K562	blood:
31	chr6:80985247..80987891-chr6:80991808..80993971,2	K562	blood:
32	chr6:80992041..80994290-chr6:81014055..81017024,2	K562	blood:
33	chr6:80924251..80924826-chr6:81185969..81186765,2	MCF-7	breast:
34	chr6:81047724..81048347-chr6:82463313..82464141,2	MCF-7	breast:
35	chr6:80983811..80985660-chr6:80989530..80991251,2	K562	blood:
36	chr6:81069036..81071236-chr6:81098177..81100852,2	K562	blood:
37	chr6:80873495..80875635-chr6:80887027..80889000,2	MCF-7	breast:
38	chr6:81032325..81034991-chr6:81050067..81051684,2	K562	blood:
39	chr6:81015812..81017908-chr6:81024634..81027101,2	K562	blood:
40	chr6:81029449..81030983-chr6:81039020..81041203,2	MCF-7	breast:
41	chr6:81032325..81034991-chr6:81050067..81051684,2	K562	blood:
42	chr6:80951610..80958338-chr6:80959333..80963216,7	K562	blood:
43	chr6:80602215..80604082-chr6:80917282..80919253,2	K562	blood:
44	chr6:80981011..80983271-chr6:80984056..80985676,2	K562	blood:
45	chr6:80959739..80962315-chr6:80965772..80968765,2	K562	blood:
46	chr6:80918332..80920585-chr6:80923073..80926052,2	MCF-7	breast:
47	chr6:80951892..80954239-chr6:80973770..80975991,3	K562	blood:
48	chr1:201223408..201224319-chr6:80895392..80896149,2	MCF-7	breast:
49	chr6:81047941..81048548-chr6:82463318..82463845,3	K562	blood:
50	chr6:80887382..80889174-chr6:80899148..80901683,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BCKDHB-3	chr6:81065141-81066576	ENSG00000272129.1
2	lnc-TTK-6	chr6:80961429-80961498	NONHSAT113723
3	lnc-TTK-6	chr6:80982852-80982907	NONHSAT113723
4	lnc-TTK-6	chr6:80912819-80912929	NONHSAT113723
5	lnc-BCKDHB-1	chr6:81128031-81128066	XLOC_005365

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	BCKDHB	hsa-miR-1	chr6:81055812-81055831
2	BCKDHB	hsa-miR-1	chr6:81054571-81054592

Variant related genes	Relation type
ENSG00000272129	TF binding region
BCKDHB	TF binding region
RPL17P25	TF binding region
ENSG00000272129	CpG island
BCKDHB	CpG island
RPL17P25	CpG island
ENSG00000083123	chromatin interactions
DMXL2	miRNA target sites

Extended variants
information (count: 9428 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:9428 , 50 per page) page: 1 2 3 4 5 6 7 ... 189

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541743327	chr6:80883704-80883705	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs564589991	chr6:80883713-80883714	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs78074570	chr6:80883761-80883762	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571279014	chr6:80883785-80883786	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs549913020	chr6:80883799-80883800	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs371727457	chr6:80883812-80883813	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs139975997	chr6:80883823-80883824	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs3805925	chr6:80883833-80883834	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs116945354	chr6:80883843-80883844	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs143128778	chr6:80883858-80883859	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181198212	chr6:80883863-80883864	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs116470848	chr6:80883864-80883865	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs386703055	chr6:80883884-80883885	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs140275359	chr6:80883886-80883887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs1408292	chr6:80883906-80883907	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs17752482	chr6:80883931-80883932	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs535572193	chr6:80883937-80883938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs555486040	chr6:80883990-80883991	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs77024417	chr6:80884006-80884007	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs150332070	chr6:80884016-80884017	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs145337344	chr6:80884136-80884137	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs373190539	chr6:80884141-80884142	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs185643266	chr6:80884151-80884152	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs578151452	chr6:80884179-80884180	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79211644	chr6:80884180-80884181	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563570472	chr6:80884181-80884182	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs529432434	chr6:80884205-80884206	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189562759	chr6:80884221-80884222	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs73750072	chr6:80884228-80884229	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs180920767	chr6:80884267-80884268	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs551445811	chr6:80884273-80884274	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs375060220	chr6:80884274-80884275	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs539792600	chr6:80884281-80884282	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534555964	chr6:80884298-80884299	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112015961	chr6:80884310-80884311	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs147180403	chr6:80884322-80884323	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs149204673	chr6:80884360-80884361	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535610551	chr6:80884363-80884364	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs187034561	chr6:80884402-80884403	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs576843496	chr6:80884406-80884407	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143345118	chr6:80884424-80884425	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs534618409	chr6:80884461-80884462	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192214833	chr6:80884516-80884517	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs114529277	chr6:80884611-80884612	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs543743159	chr6:80884715-80884716	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs139308474	chr6:80884741-80884742	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs183993643	chr6:80884743-80884744	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs187500298	chr6:80884798-80884799	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs143334310	chr6:80884809-80884810	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs147028956	chr6:80884829-80884830	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1475 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:80839200-80889600	Weak transcription	Lung	lung
4	chr6:80841200-80895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:80842200-80914200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:80853800-80891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:80855200-80907000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:80855200-80907200	Weak transcription	Ovary	ovary
9	chr6:80855400-80886200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:80855400-80895400	Weak transcription	Fetal Stomach	stomach
11	chr6:80855800-80896000	Weak transcription	Aorta	Aorta
12	chr6:80863200-80907200	Weak transcription	Psoas Muscle	Psoas
13	chr6:80868600-80891200	Weak transcription	Pancreas	Pancrea
14	chr6:80870200-80884200	Weak transcription	Left Ventricle	heart
15	chr6:80870800-80886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:80871400-80895800	Weak transcription	Right Ventricle	heart
17	chr6:80874000-80884800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:80874000-80891000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:80874000-80894000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:80874200-80884400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:80874200-80887600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:80874200-80888400	Weak transcription	Fetal Intestine Large	intestine
23	chr6:80874200-80899200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:80874600-80886200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:80875000-80891200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:80875200-80884600	Weak transcription	Primary T cells from cord blood	blood
27	chr6:80875200-80886400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:80875200-80893200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:80875400-80885000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:80875400-80891200	Weak transcription	Hela-S3	cervix
31	chr6:80875600-80884800	Weak transcription	HUVEC	blood vessel
32	chr6:80875600-80891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:80875800-80884200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:80875800-80884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:80875800-80884800	Weak transcription	NHDF-Ad	bronchial
36	chr6:80875800-80885000	Weak transcription	HSMMtube	muscle
37	chr6:80875800-80885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:80875800-80891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:80876000-80884000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:80876000-80884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:80877600-80895800	Weak transcription	Esophagus	oesophagus
42	chr6:80878000-80886400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:80878000-80891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:80878000-80921000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:80878600-80916000	Weak transcription	Adipose Nuclei	Adipose
46	chr6:80878800-80885200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr6:80878800-80907200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:80878800-80914200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:80880600-80891200	Weak transcription	Fetal Heart	heart
50	chr6:80880600-80914200	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links