Variant report

Variant	nsv508536
Chromosome Location	chr9:15811619-15834267
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1147 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:1147 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556988847	chr9:15811632-15811633	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs575243164	chr9:15811685-15811686	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs150285584	chr9:15811691-15811692	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs564500001	chr9:15811739-15811740	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs115221154	chr9:15811745-15811746	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs540902881	chr9:15811807-15811808	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs562161412	chr9:15811814-15811815	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs529484645	chr9:15811850-15811851	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs548312167	chr9:15811857-15811858	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs563335390	chr9:15811888-15811889	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs74327770	chr9:15811930-15811931	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs573307600	chr9:15811934-15811935	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs570407638	chr9:15811952-15811953	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs373644072	chr9:15811964-15811965	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs7849380	chr9:15811980-15811981	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs12002511	chr9:15811988-15811989	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs567915890	chr9:15811993-15811994	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs137971537	chr9:15812019-15812020	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs12001109	chr9:15812026-15812027	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs564330360	chr9:15812037-15812038	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs564948680	chr9:15812041-15812042	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs575378267	chr9:15812045-15812046	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs142448939	chr9:15812071-15812072	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs557899015	chr9:15812077-15812078	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs573154631	chr9:15812111-15812112	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs540593928	chr9:15812135-15812136	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs562325201	chr9:15812140-15812141	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs574296872	chr9:15812141-15812142	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs58633569	chr9:15812162-15812163	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs57078810	chr9:15812164-15812165	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs371685963	chr9:15812197-15812198	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs544860859	chr9:15812211-15812212	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs563069862	chr9:15812223-15812224	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs59106947	chr9:15812239-15812240	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs552235441	chr9:15812264-15812265	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs116097623	chr9:15812283-15812284	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs528039906	chr9:15812286-15812287	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs546587443	chr9:15812294-15812295	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs146375314	chr9:15812307-15812308	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs535356184	chr9:15812370-15812371	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs7866641	chr9:15812396-15812397	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs111472375	chr9:15812405-15812406	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs560931252	chr9:15812408-15812409	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs73420322	chr9:15812416-15812417	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs558206438	chr9:15812453-15812454	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs573161934	chr9:15812480-15812481	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs561266142	chr9:15812495-15812496	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs77022308	chr9:15812524-15812525	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs78752420	chr9:15812553-15812554	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs544898900	chr9:15812560-15812561	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15805600-15812600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:15811200-15815000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15811200-15816000	Weak transcription	Pancreas	Pancrea
4	chr9:15812000-15813400	Weak transcription	Psoas Muscle	Psoas
5	chr9:15814800-15815400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:15814800-15831200	Weak transcription	Psoas Muscle	Psoas
7	chr9:15815000-15815200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr9:15815000-15815200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:15815000-15815400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:15816400-15818400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:15816800-15817200	Weak transcription	Thymus	Thymus
12	chr9:15817000-15817400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
13	chr9:15817200-15817600	ZNF genes & repeats	Thymus	Thymus
14	chr9:15824400-15825200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:15825200-15826600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:15826400-15827000	Enhancers	Brain Cingulate Gyrus	brain
17	chr9:15826400-15827000	Enhancers	Brain Hippocampus Middle	brain
18	chr9:15826600-15827000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:15827000-15834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:15828200-15828800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:15830200-15857200	Weak transcription	Primary hematopoietic stem cells	blood

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