Variant report

Variant	nsv511407
Chromosome Location	chr9:22664277-22667225
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMRTA1-10	chr9:22664442-22664642	l_3742_chr9:22664441-22713435_adipose

Extended variants
information (count: 124 )
Associated
traits (count: 149 )

Variant overlapped rSNPs/rCNVs (count:124 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77115593	chr9:22664277-22664278	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs189793446	chr9:22664298-22664299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576931119	chr9:22664335-22664336	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs368311395	chr9:22664343-22664344	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs182056813	chr9:22664404-22664405	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs559399692	chr9:22664421-22664422	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs528121951	chr9:22664425-22664426	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541831645	chr9:22664433-22664434	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs142945933	chr9:22664434-22664435	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531255812	chr9:22664445-22664446	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs368963761	chr9:22664454-22664455	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs569441580	chr9:22664461-22664462	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs570966075	chr9:22664477-22664478	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs533562007	chr9:22664480-22664481	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs546824840	chr9:22664519-22664520	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs56916301	chr9:22664552-22664553	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs146162897	chr9:22664593-22664594	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs543532733	chr9:22664613-22664614	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs376114043	chr9:22664668-22664669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs184113599	chr9:22664697-22664698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs115088580	chr9:22664710-22664711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536959741	chr9:22664724-22664725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566761388	chr9:22664725-22664726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188799640	chr9:22664817-22664818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs180876682	chr9:22664843-22664844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs185481061	chr9:22664862-22664863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs552827298	chr9:22664864-22664865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs139962117	chr9:22664867-22664868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs541919596	chr9:22664886-22664887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149883540	chr9:22664891-22664892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575268658	chr9:22664904-22664905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs189887447	chr9:22664952-22664953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554145318	chr9:22664969-22664970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111328622	chr9:22664972-22664973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565123835	chr9:22664976-22664977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533386428	chr9:22664977-22664978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547154072	chr9:22664993-22664994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs143853547	chr9:22664999-22665000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148639705	chr9:22665011-22665012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs202229382	chr9:22665017-22665018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10122105	chr9:22665020-22665021	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs559621456	chr9:22665040-22665041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181931588	chr9:22665056-22665057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs538237823	chr9:22665057-22665058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548989	chr9:22665101-22665102	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs145221332	chr9:22665105-22665106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs116881815	chr9:22665116-22665117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs34355732	chr9:22665147-22665148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs553226555	chr9:22665148-22665149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs541722219	chr9:22665167-22665168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:149)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21858162	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22661400-22670600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:22663600-22664600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:22664600-22667200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:22667200-22667400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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