Variant report

Variant	nsv511422
Chromosome Location	chr9:15817619-15823667
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 373 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:373 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568009991	chr9:15817622-15817623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs199669944	chr9:15817633-15817634	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs538137394	chr9:15817634-15817635	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs181311160	chr9:15817684-15817685	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs578088375	chr9:15817702-15817703	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200369374	chr9:15817755-15817756	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539520397	chr9:15817780-15817781	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs557387654	chr9:15817800-15817801	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572593545	chr9:15817806-15817807	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529506831	chr9:15817872-15817873	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184681843	chr9:15817879-15817880	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs561325120	chr9:15817942-15817943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375440280	chr9:15817944-15817945	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573911818	chr9:15817968-15817969	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368341531	chr9:15817972-15817973	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201583808	chr9:15817973-15817974	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs13295963	chr9:15817978-15817979	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs562726843	chr9:15818014-15818015	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568519004	chr9:15818019-15818020	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs375561383	chr9:15818023-15818024	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs551915175	chr9:15818026-15818027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560612721	chr9:15818027-15818028	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533972617	chr9:15818029-15818030	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199513185	chr9:15818034-15818035	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200666116	chr9:15818037-15818038	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs527786848	chr9:15818072-15818073	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs143836618	chr9:15818082-15818083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201979794	chr9:15818090-15818091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs7861917	chr9:15818101-15818102	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs199808955	chr9:15818102-15818103	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200711784	chr9:15818107-15818108	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs372280121	chr9:15818129-15818130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550159380	chr9:15818131-15818132	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs139822174	chr9:15818154-15818155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs549824274	chr9:15818164-15818165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs189349917	chr9:15818170-15818171	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs149373830	chr9:15818191-15818192	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572632106	chr9:15818259-15818260	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201391786	chr9:15818270-15818271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200004249	chr9:15818277-15818278	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201251543	chr9:15818328-15818329	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs180838295	chr9:15818354-15818355	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201883999	chr9:15818384-15818385	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186536118	chr9:15818394-15818395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs199846180	chr9:15818414-15818415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs144564154	chr9:15818417-15818418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201040248	chr9:15818418-15818419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs148461786	chr9:15818431-15818432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554100936	chr9:15818458-15818459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374715313	chr9:15818464-15818465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15814800-15831200	Weak transcription	Psoas Muscle	Psoas
2	chr9:15816400-15818400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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