Variant report

Variant	nsv511442
Chromosome Location	chr10:90940325-90957403
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90807595..90810361-chr10:90944518..90946449,2	MCF-7	breast:

Extended variants
information (count: 346 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:346 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2841029	chr10:90940325-90940326	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs11203014	chr10:90940333-90940334	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs189453992	chr10:90940357-90940358	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs10887926	chr10:90940358-90940359	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs533076507	chr10:90940381-90940382	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs551583878	chr10:90940405-90940406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs369926425	chr10:90940406-90940407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs114582697	chr10:90940413-90940414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192051857	chr10:90940490-90940491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs371652455	chr10:90940533-90940534	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576531470	chr10:90940576-90940577	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs77004054	chr10:90940624-90940625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149297972	chr10:90940632-90940633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs80338499	chr10:90940675-90940676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs117779845	chr10:90940676-90940677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs10887927	chr10:90940687-90940688	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs185466173	chr10:90940709-90940710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189993150	chr10:90940735-90940736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs558346162	chr10:90940789-90940790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs143274254	chr10:90940798-90940799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs181112438	chr10:90940814-90940815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555399246	chr10:90940820-90940821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs186395607	chr10:90940913-90940914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113820323	chr10:90940914-90940915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs562719885	chr10:90940921-90940922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs180985016	chr10:90940926-90940927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs544943984	chr10:90940952-90940953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs76023004	chr10:90940975-90940976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs138899938	chr10:90941012-90941013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549109421	chr10:90941043-90941044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs186395923	chr10:90941075-90941076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs141935990	chr10:90941078-90941079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs191202753	chr10:90941144-90941145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574039969	chr10:90941254-90941255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs571121923	chr10:90941300-90941301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146317072	chr10:90941354-90941355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551609137	chr10:90941359-90941360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs566729348	chr10:90941395-90941396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs534161145	chr10:90941430-90941431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs2801530	chr10:90941441-90941442	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs567451586	chr10:90941537-90941538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs10532624	chr10:90941538-90941539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143695443	chr10:90941549-90941550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs59186800	chr10:90941560-90941561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12260768	chr10:90941584-90941585	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs112578693	chr10:90941658-90941659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs577929966	chr10:90941660-90941661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545291297	chr10:90941728-90941729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554068637	chr10:90941749-90941750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572362823	chr10:90941758-90941759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90936200-90942800	Weak transcription	NHDF-Ad	bronchial
2	chr10:90940200-90940600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:90940600-90943000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:90942600-90943800	Enhancers	NHLF	lung
5	chr10:90942600-90944000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:90942800-90944000	Enhancers	NHDF-Ad	bronchial
7	chr10:90943000-90943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:90943000-90944200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90943200-90944400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:90943400-90943800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:90943600-90943800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:90943600-90944000	Enhancers	HMEC	breast
13	chr10:90943600-90945000	Enhancers	Osteobl	bone
14	chr10:90943800-90944200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:90943800-90945400	Weak transcription	NHLF	lung
16	chr10:90944000-90945200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:90944400-90949400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:90945200-90945800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:90945200-90946000	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:90945400-90945600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:90945400-90945800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:90945400-90945800	Enhancers	Hela-S3	cervix
23	chr10:90945400-90946600	Enhancers	Fetal Lung	lung
24	chr10:90945600-90945800	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr10:90945600-90945800	Enhancers	NHLF	lung
26	chr10:90945600-90946000	Enhancers	Colon Smooth Muscle	Colon
27	chr10:90945600-90946000	Bivalent Enhancer	Stomach Mucosa	stomach
28	chr10:90946200-90947200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr10:90946400-90946800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr10:90946400-90947000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr10:90946400-90947000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr10:90955200-90956000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links