Variant report

Variant	nsv511462
Chromosome Location	chr10:719803-734229
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:721854..725155-chr10:733736..736400,3	MCF-7	breast:
2	chr10:717115..720273-chr10:724564..727281,3	MCF-7	breast:
3	chr10:717115..720273-chr10:724564..727281,3	MCF-7	breast:
4	chr10:705629..708619-chr10:732652..734638,2	MCF-7	breast:
5	chr10:674481..678808-chr10:734028..737251,4	MCF-7	breast:
6	chr10:725778..731472-chr10:731586..738263,11	MCF-7	breast:
7	chr10:723887..725590-chr10:731403..733656,2	MCF-7	breast:
8	chr10:733710..735507-chr10:754476..756731,2	MCF-7	breast:
9	chr10:723887..725590-chr10:731403..733656,2	MCF-7	breast:
10	chr10:656339..658937-chr10:722531..724771,2	MCF-7	breast:
11	chr10:719611..721837-chr10:748749..751307,2	K562	blood:
12	chr10:712816..715288-chr10:723469..725023,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP4B-3	chr10:724395-724591	NONHSAT010869
2	lnc-LARP4B-3	chr10:724715-724736	NONHSAT010869

No data

Variant related genes	Relation type
ENSG00000151240	chromatin interactions
ENSG00000225140	chromatin interactions
ENSG00000272992	chromatin interactions

Extended variants
information (count: 680 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:680 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4880737	chr10:719803-719804	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs531872295	chr10:719824-719825	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs140578447	chr10:719839-719840	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541253030	chr10:719876-719877	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs564235735	chr10:719915-719916	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs551589079	chr10:719918-719919	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs550256371	chr10:719968-719969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs183930209	chr10:720012-720013	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs79381221	chr10:720017-720018	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs371999500	chr10:720024-720025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs548472604	chr10:720097-720098	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs568401225	chr10:720101-720102	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs199832189	chr10:720124-720125	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs200739111	chr10:720130-720131	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs533954099	chr10:720180-720181	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs188216352	chr10:720224-720225	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs562083282	chr10:720294-720295	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570519052	chr10:720366-720367	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs192603358	chr10:720389-720390	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576006420	chr10:720393-720394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs7088849	chr10:720435-720436	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs184999884	chr10:720467-720468	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs144439248	chr10:720469-720470	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs541857089	chr10:720475-720476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs561763750	chr10:720510-720511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs541215167	chr10:720530-720531	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs376081622	chr10:720556-720557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs533574270	chr10:720571-720572	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs147400317	chr10:720584-720585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs563821032	chr10:720595-720596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs12242637	chr10:720608-720609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs527552760	chr10:720633-720634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373896363	chr10:720657-720658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571487356	chr10:720658-720659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190493433	chr10:720680-720681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375454744	chr10:720711-720712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs371357045	chr10:720727-720728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs12247477	chr10:720729-720730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201234736	chr10:720731-720732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201996433	chr10:720733-720734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs199910319	chr10:720735-720736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs71487476	chr10:720736-720737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376136632	chr10:720737-720738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs367566926	chr10:720739-720740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs58092455	chr10:720760-720761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs527535329	chr10:720765-720766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547381975	chr10:720766-720767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs567589171	chr10:720769-720770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372737882	chr10:720774-720775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7913152	chr10:720807-720808	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:736 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:698400-723800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:710200-723800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:712000-723600	Weak transcription	Aorta	Aorta
4	chr10:712000-723800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:712200-725600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:712800-726000	Weak transcription	Fetal Stomach	stomach
7	chr10:713400-728800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:716200-725600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:716200-725800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:716400-723000	Weak transcription	Right Ventricle	heart
11	chr10:716400-723800	Weak transcription	Esophagus	oesophagus
12	chr10:716400-723800	Weak transcription	Gastric	stomach
13	chr10:716400-723800	Weak transcription	Pancreas	Pancrea
14	chr10:716400-723800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:716400-725600	Weak transcription	Fetal Heart	heart
16	chr10:716400-726400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:716400-729200	Weak transcription	Fetal Lung	lung
18	chr10:716400-732200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:716400-734200	Weak transcription	Fetal Kidney	kidney
20	chr10:718000-720000	Enhancers	Brain Anterior Caudate	brain
21	chr10:718000-720000	Enhancers	Brain Substantia Nigra	brain
22	chr10:718400-720200	Enhancers	Colon Smooth Muscle	Colon
23	chr10:718400-723600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:718400-723800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:718400-725600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:718800-720000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:718800-720000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:719000-720000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:719200-720600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:719400-720000	Enhancers	Lung	lung
31	chr10:719400-720000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:719600-725600	Weak transcription	Fetal Brain Male	brain
33	chr10:719800-720000	Enhancers	Fetal Brain Female	brain
34	chr10:719800-722200	Weak transcription	Brain Angular Gyrus	brain
35	chr10:719800-722200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:719800-723000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:719800-723000	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:719800-723200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:719800-723200	Weak transcription	Left Ventricle	heart
40	chr10:719800-723800	Weak transcription	Psoas Muscle	Psoas
41	chr10:719800-725600	Weak transcription	Ovary	ovary
42	chr10:719800-725600	Weak transcription	Right Atrium	heart
43	chr10:719800-725800	Weak transcription	Adipose Nuclei	Adipose
44	chr10:719800-726000	Weak transcription	Brain Germinal Matrix	brain
45	chr10:720000-720400	Weak transcription	Lung	lung
46	chr10:720000-721600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:720000-721800	Weak transcription	Fetal Brain Female	brain
48	chr10:720000-722000	Weak transcription	Brain Anterior Caudate	brain
49	chr10:720000-723000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:720000-723200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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