Variant report

Variant	nsv511966
Chromosome Location	chr7:64315740-64318822
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:64318013-64318317	K562	blood:	n/a	chr7:64318158-64318167
2	NR2F2	chr7:64317516-64317990	K562	blood:	n/a	n/a
3	NR2F2	chr7:64317582-64317932	K562	blood:	n/a	n/a
4	PAX5	chr7:64315968-64316238	GM12878	blood:	n/a	n/a
5	STAT5A	chr7:64315306-64315768	K562	blood:	n/a	n/a
6	TAL1	chr7:64318171-64318222	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:64314139..64316583-chr7:64317085..64319810,2	K562	blood:
2	chr7:64311946..64314507-chr7:64316906..64318965,2	MCF-7	breast:
3	chr7:64314110..64316754-chr7:64405768..64408146,2	K562	blood:
4	chr7:64314139..64316583-chr7:64317085..64319810,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF138-2	chr7:64318585-64318690	NONHSAT121044

No data

Variant related genes	Relation type
ENSG00000213640	TF binding region
SEPHS1P1	TF binding region
ENSG00000182722	chromatin interactions

Extended variants
information (count: 53 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138833147	chr7:64315748-64315749	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs372000262	chr7:64315749-64315750	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs116457823	chr7:64315787-64315788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs575817316	chr7:64315801-64315802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376513628	chr7:64315825-64315826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs368488338	chr7:64315826-64315827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372437678	chr7:64315827-64315828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs370388715	chr7:64316206-64316207	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs569225219	chr7:64316235-64316236	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs9769988	chr7:64316240-64316241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs9769989	chr7:64316241-64316242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs9769999	chr7:64316276-64316277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs9770000	chr7:64316277-64316278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs9770002	chr7:64316314-64316315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs9769126	chr7:64316625-64316626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs9769155	chr7:64317004-64317005	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs373647122	chr7:64317502-64317503	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs377577008	chr7:64317527-64317528	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs370706732	chr7:64317529-64317530	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs375180200	chr7:64317585-64317586	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs368539368	chr7:64317627-64317628	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs371471436	chr7:64317677-64317678	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs374636449	chr7:64317774-64317775	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs367639752	chr7:64317788-64317789	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs371427060	chr7:64317789-64317790	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs187162845	chr7:64317827-64317828	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs374878172	chr7:64317828-64317829	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs62458433	chr7:64318008-64318009	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs541651742	chr7:64318041-64318042	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs561646271	chr7:64318044-64318045	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs201281484	chr7:64318057-64318058	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs199831188	chr7:64318058-64318059	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs572051461	chr7:64318073-64318074	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs200856817	chr7:64318095-64318096	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs540585444	chr7:64318152-64318153	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs116240041	chr7:64318179-64318180	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs367999166	chr7:64318206-64318207	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs368086993	chr7:64318313-64318314	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs12534535	chr7:64318329-64318330	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs149505512	chr7:64318341-64318342	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs563423066	chr7:64318427-64318428	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs1983466	chr7:64318461-64318462	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs182584177	chr7:64318532-64318533	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs34888488	chr7:64318551-64318552	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs566336025	chr7:64318584-64318585	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs536864532	chr7:64318585-64318586	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
47	rs551723646	chr7:64318645-64318646	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
48	rs550371220	chr7:64318660-64318661	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
49	rs6460199	chr7:64318695-64318696	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs369726498	chr7:64318735-64318736	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	17426248	CNVD
Williams Syndrome	20824207	CNVD
Cognitive impairment	21505072	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64310400-64320600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links