Variant report
| Variant | nsv512357 |
|---|---|
| Chromosome Location | chr14:40098039-40100436 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs61425736 | chr14:40098072-40098073 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs910794 | chr14:40098075-40098076 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs144188860 | chr14:40098144-40098145 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs142039068 | chr14:40098170-40098171 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs550096367 | chr14:40098194-40098195 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs11428524 | chr14:40098251-40098252 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs397807879 | chr14:40098254-40098255 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs397764610 | chr14:40098255-40098256 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs111409752 | chr14:40098297-40098298 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs543260703 | chr14:40098312-40098313 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs575148378 | chr14:40098354-40098355 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs59788308 | chr14:40098392-40098393 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:59)
| Disease | PMID | Source |
|---|---|---|
| Esophageal cancer | 21851588 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| High-proliferative meningiomas | 17937814 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Autism | 22495311 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Cancer | 21637783 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Melanoma | 18172304 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Neuroblastoma | 19435921 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Breast cancer | 17899364 | CNVD |
| Gastrointestinal stromal cancer | 19259404 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Gastrointestinal stromal cancer | 20818650 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Chronic myeloid leukemia | 20724749 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Burkitt''s lymphoma | 19759907 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| abnormal development | 18461090 | CNVD |
| Prostate cancer | 21298110 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Intellectual disability | 22045946 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Cancer | 21183584 | CNVD |
| Thyroid cancer | 19470727 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Congenital diaphragmatic hernia | 21525063 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Breast cancer | 21364760 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:40096800-40098200 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
| 2 | chr14:40096800-40098400 | Enhancers | Primary T cells from cord blood | blood |
| 3 | chr14:40096800-40098400 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
| 4 | chr14:40097200-40098200 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
| 5 | chr14:40097200-40098200 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
| 6 | chr14:40097200-40098400 | Enhancers | Dnd41 | blood |
| 7 | chr14:40097400-40098200 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
| 8 | chr14:40097600-40098200 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
| 9 | chr14:40097800-40098400 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
