Variant report

Variant	nsv514407
Chromosome Location	chr7:16357609-16399725
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:16382268..16383861-chr7:16437645..16440357,2	K562	blood:
2	chr7:16364478..16366414-chr7:16372381..16373982,2	K562	blood:
3	chr7:16361901..16363592-chr7:16364009..16366007,2	K562	blood:
4	chr7:16361874..16363592-chr7:16364507..16366476,2	K562	blood:
5	chr7:16358608..16360256-chr7:16374793..16376621,2	K562	blood:
6	chr7:16364478..16366414-chr7:16372381..16373982,2	K562	blood:
7	chr7:16355408..16358313-chr7:16359954..16363461,3	K562	blood:
8	chr7:16394955..16400745-chr7:16401367..16408404,9	K562	blood:
9	chr7:16397851..16402172-chr7:16402336..16405323,3	K562	blood:
10	chr7:16371339..16372978-chr7:16382400..16384507,2	K562	blood:
11	chr7:16347978..16350861-chr7:16364873..16367398,2	K562	blood:
12	chr7:16355252..16356944-chr7:16359954..16363461,3	K562	blood:
13	chr7:16381261..16383873-chr7:16387372..16389637,2	K562	blood:
14	chr7:16355408..16358313-chr7:16359954..16363461,3	K562	blood:
15	chr7:16375946..16378002-chr7:16389862..16391543,2	MCF-7	breast:
16	chr7:16371339..16372978-chr7:16382400..16384507,2	K562	blood:
17	chr7:16361874..16363592-chr7:16364507..16366476,2	K562	blood:
18	chr7:16348138..16350804-chr7:16362128..16364167,2	K562	blood:
19	chr7:16381261..16383873-chr7:16387372..16389637,2	K562	blood:
20	chr7:16358608..16360256-chr7:16374793..16376621,2	K562	blood:
21	chr7:16361901..16363592-chr7:16364009..16366007,2	K562	blood:
22	chr7:16374992..16378303-chr7:16378786..16381334,3	K562	blood:
23	chr7:16375946..16378002-chr7:16389862..16391543,2	MCF-7	breast:
24	chr7:16374992..16378303-chr7:16378786..16381334,3	K562	blood:

No data

Extended variants
information (count: 1807 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1807 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114712745	chr7:16357657-16357658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs557215815	chr7:16357682-16357683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs75033395	chr7:16357699-16357700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs181341733	chr7:16357701-16357702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs547195285	chr7:16357705-16357706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144016362	chr7:16357715-16357716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs560334605	chr7:16357716-16357717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116834950	chr7:16357742-16357743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs185765467	chr7:16357754-16357755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561680459	chr7:16357825-16357826	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs528974116	chr7:16357875-16357876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs550342627	chr7:16357920-16357921	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs566920334	chr7:16357937-16357938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs375957223	chr7:16358004-16358005	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs562447644	chr7:16358012-16358013	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs532853203	chr7:16358095-16358096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs114181265	chr7:16358139-16358140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs569521330	chr7:16358228-16358229	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs73684128	chr7:16358235-16358236	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs533699702	chr7:16358248-16358249	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs190616086	chr7:16358270-16358271	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74840721	chr7:16358295-16358296	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs538321408	chr7:16358300-16358301	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs556164919	chr7:16358302-16358303	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs984810	chr7:16358315-16358316	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs538962282	chr7:16358410-16358411	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146499696	chr7:16358421-16358422	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs984809	chr7:16358427-16358428	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs59719187	chr7:16358474-16358475	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs144917291	chr7:16358481-16358482	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs183196927	chr7:16358535-16358536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371852481	chr7:16358539-16358540	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs148267183	chr7:16358554-16358555	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs140371937	chr7:16358560-16358561	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551701618	chr7:16358599-16358600	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs560476799	chr7:16358637-16358638	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs187933052	chr7:16358708-16358709	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs548939186	chr7:16358768-16358769	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs369797613	chr7:16358842-16358843	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs191966986	chr7:16358907-16358908	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549827500	chr7:16358938-16358939	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs182635580	chr7:16358966-16358967	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs571311352	chr7:16358992-16358993	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs150405405	chr7:16358999-16359000	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553742825	chr7:16359021-16359022	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs73684129	chr7:16359028-16359029	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs55750250	chr7:16359060-16359061	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs74639410	chr7:16359083-16359084	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187649160	chr7:16359085-16359086	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192856586	chr7:16359105-16359106	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Cancer	21183584	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	19805367	CNVD
Autism	20808228	CNVD

Chromatin state (count:221 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16355600-16358400	Weak transcription	A549	lung
2	chr7:16355800-16357800	Weak transcription	Stomach Mucosa	stomach
3	chr7:16357200-16360400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:16357200-16372600	Weak transcription	K562	blood
5	chr7:16357400-16358400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:16357800-16359800	Enhancers	Stomach Mucosa	stomach
7	chr7:16358200-16358600	Enhancers	Gastric	stomach
8	chr7:16358200-16359400	Enhancers	HMEC	breast
9	chr7:16358200-16359400	Enhancers	NHEK	skin
10	chr7:16358200-16359600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:16358200-16359600	Enhancers	HUVEC	blood vessel
12	chr7:16358200-16359600	Enhancers	Osteobl	bone
13	chr7:16358200-16359800	Enhancers	NH-A	brain
14	chr7:16358400-16359200	Enhancers	A549	lung
15	chr7:16358400-16359400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:16358400-16359400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:16358400-16359600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:16358400-16359600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:16358600-16359000	Weak transcription	Gastric	stomach
20	chr7:16358600-16359200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:16358800-16359200	Enhancers	HSMM	muscle
22	chr7:16358800-16359400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:16359000-16359400	Enhancers	NHLF	lung
24	chr7:16359000-16359600	Enhancers	Gastric	stomach
25	chr7:16359000-16359600	Enhancers	HSMMtube	muscle
26	chr7:16359200-16359600	Enhancers	Esophagus	oesophagus
27	chr7:16359600-16373600	Weak transcription	Gastric	stomach
28	chr7:16359800-16360400	Weak transcription	Stomach Mucosa	stomach
29	chr7:16360400-16360800	Enhancers	Stomach Mucosa	stomach
30	chr7:16362600-16363800	Enhancers	Fetal Heart	heart
31	chr7:16368800-16369200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:16370400-16373600	Weak transcription	Aorta	Aorta
33	chr7:16372600-16373600	ZNF genes & repeats	K562	blood
34	chr7:16373200-16384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:16373600-16373800	ZNF genes & repeats	Aorta	Aorta
36	chr7:16373600-16374200	ZNF genes & repeats	Gastric	stomach
37	chr7:16374000-16375400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:16375400-16375800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:16375400-16376800	Enhancers	Primary T cells from cord blood	blood
40	chr7:16375800-16376400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:16375800-16376600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:16378600-16381200	Weak transcription	K562	blood
43	chr7:16379800-16380400	Enhancers	HUVEC	blood vessel
44	chr7:16382600-16383000	Enhancers	Primary T cells from cord blood	blood
45	chr7:16383400-16383600	ZNF genes & repeats	K562	blood
46	chr7:16384000-16385000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:16384400-16385000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:16384600-16385000	Enhancers	Stomach Mucosa	stomach
49	chr7:16384800-16385400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr7:16384800-16388000	Enhancers	Muscle Satellite Cultured Cells	--

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