Variant report

Variant	nsv515029
Chromosome Location	chr6:161019674-161071514
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161019352..161022051-chr6:161023813..161026327,2	K562	blood:
2	chr6:161022530..161025379-chr6:161026133..161029753,3	K562	blood:
3	chr6:161022530..161025379-chr6:161026133..161029753,3	K562	blood:
4	chr6:161019352..161022051-chr6:161023813..161026327,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-2	chr6:161041576-161041654	NONHSAT115908
2	lnc-PLG-2	chr6:161039310-161039522	NONHSAT115908

No data

Extended variants
information (count: 1346 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:1346 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147983133	chr6:161019687-161019688	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs575825828	chr6:161019696-161019697	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186724435	chr6:161019706-161019707	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs41271012	chr6:161019710-161019711	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs41271010	chr6:161019711-161019712	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs191138253	chr6:161019746-161019747	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs527547016	chr6:161019753-161019754	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs73784302	chr6:161019776-161019777	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs41271008	chr6:161019782-161019783	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs534921717	chr6:161019818-161019819	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs41271006	chr6:161019856-161019857	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs6926458	chr6:161019866-161019867	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs549844777	chr6:161019895-161019896	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs41271004	chr6:161019929-161019930	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569603656	chr6:161019936-161019937	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs535874872	chr6:161019964-161019965	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs555965411	chr6:161019999-161020000	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs566301145	chr6:161020000-161020001	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187784501	chr6:161020031-161020032	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs6904684	chr6:161020048-161020049	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571605277	chr6:161020076-161020077	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376262114	chr6:161020104-161020105	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs549351047	chr6:161020133-161020134	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs9457948	chr6:161020158-161020159	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543496352	chr6:161020192-161020193	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs546340664	chr6:161020200-161020201	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs569226125	chr6:161020232-161020233	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs557325122	chr6:161020257-161020258	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs574008893	chr6:161020272-161020273	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs542727680	chr6:161020280-161020281	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532638105	chr6:161020297-161020298	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547618771	chr6:161020298-161020299	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561516351	chr6:161020299-161020300	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571937095	chr6:161020306-161020307	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs41271002	chr6:161020307-161020308	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs564271764	chr6:161020323-161020324	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566645917	chr6:161020351-161020352	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549471592	chr6:161020380-161020381	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7743535	chr6:161020388-161020389	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs7767342	chr6:161020404-161020405	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs41271000	chr6:161020417-161020418	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs566264387	chr6:161020459-161020460	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs535272045	chr6:161020460-161020461	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs538129573	chr6:161020476-161020477	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs192900324	chr6:161020480-161020481	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs373517734	chr6:161020494-161020495	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376205619	chr6:161020501-161020502	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7450261	chr6:161020505-161020506	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs373033020	chr6:161020506-161020507	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs41270998	chr6:161020526-161020527	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Carotid artery disease	21127300	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160990600-161032600	Strong transcription	Liver	Liver
2	chr6:161019200-161022200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:161022200-161025000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:161025000-161026200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:161026200-161029400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:161031200-161031800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
7	chr6:161031800-161032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:161032000-161032600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:161032600-161034200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:161032600-161034400	Weak transcription	Liver	Liver
11	chr6:161055600-161056000	Active TSS	Fetal Heart	heart
12	chr6:161055600-161056000	ZNF genes & repeats	Stomach Mucosa	stomach
13	chr6:161055600-161056200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
14	chr6:161055800-161056000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
15	chr6:161055800-161056000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:161055800-161056000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:161055800-161056000	ZNF genes & repeats	Fetal Brain Male	brain
18	chr6:161055800-161056200	ZNF genes & repeats	Fetal Stomach	stomach
19	chr6:161056200-161069400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:161063400-161067800	Weak transcription	Liver	Liver
21	chr6:161067800-161072400	Strong transcription	Liver	Liver
22	chr6:161069400-161069800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
23	chr6:161069800-161071600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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