Variant report

Variant nsv515534
Chromosome Location chr15:52998262-53025692
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:311 , 50 per page) page: 1 2 3 4 5 6 7
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52995000-52999600 Weak transcription Primary B cells from peripheral blood blood
2 chr15:52995800-53001600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr15:52997800-52998800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
4 chr15:52998200-52998400 Enhancers Liver Liver
5 chr15:52998200-52998800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr15:52998200-52998800 Enhancers NHEK skin
7 chr15:52998200-52999200 Enhancers Muscle Satellite Cultured Cells --
8 chr15:52998200-52999400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr15:52998400-52998800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr15:52998400-52999000 Flanking Active TSS Liver Liver
11 chr15:52998400-52999000 Enhancers HSMM muscle
12 chr15:52998800-53000800 Enhancers Primary B cells from cord blood blood
13 chr15:52998800-53001000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr15:52998800-53001200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr15:52998800-53001600 Weak transcription NHEK skin
16 chr15:52998800-53002200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr15:52999000-52999200 Active TSS Liver Liver
18 chr15:52999200-52999400 Flanking Active TSS Liver Liver
19 chr15:52999400-52999800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr15:52999400-53000200 Active TSS Liver Liver
21 chr15:52999600-53001000 Enhancers Primary B cells from peripheral blood blood
22 chr15:52999800-53001200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr15:53000200-53000800 Flanking Active TSS Liver Liver
24 chr15:53000400-53000600 Enhancers Adipose Nuclei Adipose
25 chr15:53000400-53001200 Enhancers Sigmoid Colon Sigmoid Colon
26 chr15:53000400-53001200 Enhancers HepG2 liver
27 chr15:53000600-53001000 Enhancers Fetal Intestine Large intestine
28 chr15:53000800-53001000 Active TSS Liver Liver
29 chr15:53000800-53001800 Weak transcription Adipose Nuclei Adipose
30 chr15:53000800-53002000 Flanking Active TSS Primary B cells from cord blood blood
31 chr15:53001000-53001200 Flanking Active TSS Liver Liver
32 chr15:53001000-53001200 Enhancers Duodenum Mucosa Duodenum
33 chr15:53001000-53001200 Flanking Active TSS Fetal Intestine Large intestine
34 chr15:53001000-53001200 Enhancers Fetal Intestine Small intestine
35 chr15:53001000-53001400 Enhancers Rectal Mucosa Donor 29 rectum
36 chr15:53001000-53001600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
37 chr15:53001000-53001600 Enhancers Rectal Mucosa Donor 31 rectum
38 chr15:53001000-53001800 Enhancers GM12878-XiMat blood
39 chr15:53001000-53002200 Flanking Active TSS Primary B cells from peripheral blood blood
40 chr15:53001200-53001600 Active TSS Liver Liver
41 chr15:53001200-53001800 Flanking Active TSS Duodenum Mucosa Duodenum
42 chr15:53001200-53002000 Active TSS Fetal Intestine Large intestine
43 chr15:53001200-53002000 Active TSS Fetal Intestine Small intestine
44 chr15:53001200-53002400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr15:53001200-53002600 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr15:53001200-53002800 Flanking Active TSS HepG2 liver
47 chr15:53001400-53001600 Enhancers H1 Cell Line embryonic stem cell
48 chr15:53001400-53001600 Enhancers H9 Cell Line embryonic stem cell
49 chr15:53001400-53001600 Enhancers HUES6 Cell Line embryonic stem cell
50 chr15:53001400-53001800 Flanking Active TSS HUES64 Cell Line embryonic stem cell

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