Variant report

Variant	nsv515756
Chromosome Location	chr6:167826815-167832036
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167823826..167826272-chr6:167829672..167831832,2	K562	blood:
2	chr6:167818746..167821496-chr6:167831177..167833070,2	K562	blood:
3	chr20:57615578..57617834-chr6:167831422..167833295,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP10-3	chr6:167826637-167827774	ucscGeneNc_uc003qvy_1

Variant related genes	Relation type
ENSG00000101166	chromatin interactions

Extended variants
information (count: 236 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:236 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9347222	chr6:167826815-167826816	Weak transcription Bivalent Enhancer	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs115893036	chr6:167826836-167826837	Weak transcription Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
3	rs550938811	chr6:167826847-167826848	Weak transcription Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
4	rs563099739	chr6:167826848-167826849	Weak transcription Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
5	rs533226612	chr6:167826894-167826895	Weak transcription Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
6	rs9364941	chr6:167826896-167826897	Weak transcription Bivalent Enhancer	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs75767184	chr6:167826902-167826903	Weak transcription Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
8	rs533963572	chr6:167826947-167826948	Weak transcription Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
9	rs11758957	chr6:167826953-167826954	Weak transcription Bivalent Enhancer	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs138191135	chr6:167827016-167827017	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs116267270	chr6:167827056-167827057	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs140844442	chr6:167827091-167827092	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs150145931	chr6:167827092-167827093	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs112299911	chr6:167827116-167827117	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs71554915	chr6:167827154-167827155	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs9355644	chr6:167827156-167827157	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs149273215	chr6:167827172-167827173	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs562364355	chr6:167827192-167827193	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs574335921	chr6:167827204-167827205	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs544897104	chr6:167827261-167827262	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs562903486	chr6:167827265-167827266	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs533593203	chr6:167827270-167827271	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs146197515	chr6:167827275-167827276	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs137906798	chr6:167827304-167827305	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs11752224	chr6:167827318-167827319	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs12213033	chr6:167827354-167827355	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs567327168	chr6:167827356-167827357	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs75014712	chr6:167827357-167827358	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs78456519	chr6:167827376-167827377	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs116816618	chr6:167827380-167827381	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs539648058	chr6:167827386-167827387	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs373321649	chr6:167827398-167827399	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs12193232	chr6:167827405-167827406	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs564504413	chr6:167827496-167827497	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs12213045	chr6:167827502-167827503	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs181664770	chr6:167827533-167827534	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs185939348	chr6:167827534-167827535	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs374397321	chr6:167827535-167827536	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs142345660	chr6:167827559-167827560	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs146164486	chr6:167827638-167827639	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs114293376	chr6:167827639-167827640	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs140171112	chr6:167827676-167827677	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs529858924	chr6:167827693-167827694	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs572474670	chr6:167827701-167827702	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs188838891	chr6:167827716-167827717	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs60110162	chr6:167827718-167827719	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs560913000	chr6:167827722-167827723	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs6455562	chr6:167827760-167827761	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs376663246	chr6:167827790-167827791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7770785	chr6:167827808-167827809	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Developmental delay	21147756	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167821400-167829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:167821600-167829400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:167822200-167829000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:167824400-167827000	Bivalent Enhancer	HepG2	liver
5	chr6:167824400-167829000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:167825200-167830200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:167828000-167829000	Bivalent Enhancer	HepG2	liver
8	chr6:167828200-167829800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:167828800-167829800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:167829000-167829600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:167829000-167829600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:167829000-167829600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:167829000-167829600	Flanking Bivalent TSS/Enh	HepG2	liver
14	chr6:167829200-167829600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:167829400-167829600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:167829600-167830000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:167829600-167830400	Bivalent Enhancer	HepG2	liver
18	chr6:167829600-167833800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:167829600-167834800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:167829600-167841400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:167829800-167830200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:167829800-167842200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:167830000-167830200	Active TSS	Fetal Brain Male	brain
24	chr6:167830000-167830400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:167830000-167830600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:167830200-167830400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:167830200-167830400	Flanking Active TSS	Fetal Brain Male	brain
28	chr6:167830200-167830800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:167830400-167830600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr6:167830400-167830600	Enhancers	HepG2	liver
31	chr6:167830400-167832400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:167830400-167840200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:167830600-167830800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:167830600-167832800	Weak transcription	HepG2	liver
35	chr6:167830600-167836600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:167831000-167833600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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