Variant report

Variant	nsv515989
Chromosome Location	chr8:9314784-9315807
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNKS-5	chr8:9314677-9314928	NONHSAT124956

Extended variants
information (count: 40 )
Associated
traits (count: 136 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10503382	chr8:9314784-9314785	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs17675288	chr8:9314786-9314787	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs544356884	chr8:9314790-9314791	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs117540986	chr8:9314821-9314822	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs530147494	chr8:9314829-9314830	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs560119442	chr8:9314832-9314833	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs61041281	chr8:9314833-9314834	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs560115326	chr8:9314846-9314847	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs558228602	chr8:9314859-9314860	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs189270942	chr8:9314882-9314883	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs192354779	chr8:9314884-9314885	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs531970176	chr8:9314887-9314888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs548514775	chr8:9314900-9314901	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs568120821	chr8:9314904-9314905	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs12680899	chr8:9315400-9315401	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs73662367	chr8:9315408-9315409	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs576636950	chr8:9315444-9315445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs542200550	chr8:9315451-9315452	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs562262541	chr8:9315460-9315461	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs185547684	chr8:9315461-9315462	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs547500046	chr8:9315486-9315487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs564135727	chr8:9315497-9315498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs534498633	chr8:9315500-9315501	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs532904535	chr8:9315516-9315517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs4841154	chr8:9315518-9315519	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs567310635	chr8:9315550-9315551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs536348337	chr8:9315611-9315612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs139952523	chr8:9315617-9315618	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs35626936	chr8:9315623-9315624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs539157373	chr8:9315627-9315628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs377246612	chr8:9315642-9315643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs535728770	chr8:9315668-9315669	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs66494175	chr8:9315680-9315681	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs565525151	chr8:9315691-9315692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs142176893	chr8:9315695-9315696	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs557555356	chr8:9315722-9315723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs576880143	chr8:9315723-9315724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs189403110	chr8:9315776-9315777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs556513287	chr8:9315782-9315783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs576406978	chr8:9315791-9315792	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:136)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Bladder cancer	21909424	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9315400-9315800	Enhancers	Brain Inferior Temporal Lobe	brain

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