Variant report

Variant	nsv516067
Chromosome Location	chr8:119420259-119421020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 142 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4876823	chr8:119420259-119420260	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs73311726	chr8:119420273-119420274	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs140010290	chr8:119420283-119420284	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs369222580	chr8:119420328-119420329	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4876824	chr8:119420362-119420363	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs4876825	chr8:119420389-119420390	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs555629752	chr8:119420396-119420397	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs115352011	chr8:119420398-119420399	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544515002	chr8:119420409-119420410	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs10086502	chr8:119420424-119420425	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs73311730	chr8:119420466-119420467	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs545311730	chr8:119420494-119420495	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10086524	chr8:119420553-119420554	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs561827477	chr8:119420555-119420556	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527294688	chr8:119420573-119420574	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149806443	chr8:119420579-119420580	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs370266967	chr8:119420674-119420675	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs6985984	chr8:119420714-119420715	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs7004302	chr8:119420722-119420723	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs7004323	chr8:119420775-119420776	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs375943145	chr8:119420878-119420879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs145754617	chr8:119420944-119420945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376348732	chr8:119420961-119420962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs4876826	chr8:119420999-119421000	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs4876827	chr8:119421020-119421021	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:142)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	17603634	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Non-small cell lung cancer	19010865	CNVD
small cell lung cancer	20016488	CNVD
Chronic myeloid leukemia	21384125	CNVD
Papillary thyroid cancer	17515504	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Breast cancer	20932292	CNVD
Gastric cancer	22539939	CNVD
Breast cancer	22056952	CNVD
Langer-Giedion syndrome	16773131	CNVD
Lung cancer	16740712	CNVD
Mental retardation	16773131	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Langer-Giedion syndrome	22470819	CNVD
Cornelia de Lange syndrome	24599119	CNVD
Gastric cancer	21528007	CNVD
Breast cancer	22532251	CNVD
Cervical cancer	21062161	CNVD
Cancer	21129771	CNVD
benign familial neonatal convulsions	18472482	CNVD
Breast cancer	16417655	CNVD
Astrocytoma	17387387	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	20607354	CNVD
Breast cancer	20814816	CNVD
Colorectal cancer	22486879	CNVD
Breast cancer	17908964	CNVD
Colorectal cancer	20031965	CNVD
Hepatocellular carcinoma	16750200	CNVD
Ovarian cancer	17908964	CNVD
Ovarian cancer	20031965	CNVD
Prostate cancer	20031965	CNVD
Non-small cell lung cancer	17643093	CNVD
Prostate cancer	19242612	CNVD
Colorectal cancer	16774939	CNVD
Oral squamous cell carcinoma	21853135	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	18628472	CNVD
Malignant melanoma	17260012	CNVD
Breast cancer	18698023	CNVD
Multiple myeloma	16461302	CNVD
Uveal melanoma	20484589	CNVD
head and neck squamous cell carcinoma	16740747	CNVD
Breast cancer	19181860	CNVD
Endometrial cancer	23636398	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	16397240	CNVD
Multiple myeloma	16616336	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Prostate cancer	22341455	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Lung adenocarcinoma	21935476	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119398800-119422000	Weak transcription	GM12878-XiMat	blood
2	chr8:119413600-119431400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:119419400-119420600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:119419800-119420800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:119419800-119420800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:119420000-119420400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:119420000-119420600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr8:119420000-119420600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:119420000-119420600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:119420000-119420600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:119420200-119420600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:119420200-119420600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:119420200-119420600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:119420600-119425600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:119420600-119425600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:119420600-119426000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:119420600-119427200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:119420600-119431200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:119420800-119425800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:119420800-119426000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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