Variant report

Variant	nsv516098
Chromosome Location	chr7:3135770-3137677
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC091801.1.1-5	chr7:3137039-3137347	NONHSAT118841
2	lnc-AC091801.1.1-5	chr7:3137040-3137347	XLOC_006338

Variant related genes	Relation type
C3orf59	miRNA target sites

Extended variants
information (count: 111 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10265027	chr7:3135770-3135771	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs16870744	chr7:3135781-3135782	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs544140567	chr7:3135836-3135837	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564412281	chr7:3135849-3135850	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558041784	chr7:3135904-3135905	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs7783502	chr7:3135914-3135915	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs574932246	chr7:3135986-3135987	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs540422523	chr7:3135994-3135995	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555799808	chr7:3136036-3136037	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs58913654	chr7:3136037-3136038	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs397945010	chr7:3136046-3136047	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560431532	chr7:3136058-3136059	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs17132968	chr7:3136074-3136075	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs187751155	chr7:3136078-3136079	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs190971527	chr7:3136089-3136090	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144741962	chr7:3136119-3136120	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550952858	chr7:3136143-3136144	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570813770	chr7:3136192-3136193	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187500193	chr7:3136209-3136210	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs192978901	chr7:3136217-3136218	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566749712	chr7:3136239-3136240	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs535173360	chr7:3136252-3136253	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs555454962	chr7:3136279-3136280	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs141437735	chr7:3136298-3136299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs544195567	chr7:3136324-3136325	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557513296	chr7:3136331-3136332	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150361400	chr7:3136377-3136378	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs184712068	chr7:3136387-3136388	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188073617	chr7:3136415-3136416	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192597728	chr7:3136460-3136461	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs202152890	chr7:3136471-3136472	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs183584213	chr7:3136476-3136477	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs188265217	chr7:3136494-3136495	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs144994191	chr7:3136501-3136502	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550950663	chr7:3136502-3136503	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs181866435	chr7:3136512-3136513	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs66883350	chr7:3136548-3136549	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs533422883	chr7:3136550-3136551	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs184849197	chr7:3136557-3136558	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7789148	chr7:3136560-3136561	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs190086623	chr7:3136568-3136569	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532298579	chr7:3136569-3136570	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181728178	chr7:3136586-3136587	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186398549	chr7:3136588-3136589	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569164691	chr7:3136589-3136590	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs191244900	chr7:3136613-3136614	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs369983314	chr7:3136617-3136618	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs537478523	chr7:3136619-3136620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs557773234	chr7:3136642-3136643	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs148962416	chr7:3136705-3136706	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Chordoma	21602918	CNVD
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Developmental delay	21147756	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Nasopharyngeal cancer	20548289	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
Spondylocostal dysostosis	21085971	CNVD
Mental retardation	17901693	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	22286061	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3135000-3136200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr7:3135200-3136000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:3135200-3136000	Enhancers	Primary B cells from cord blood	blood
4	chr7:3135200-3136000	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:3135200-3136000	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:3135200-3136000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr7:3135200-3136200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:3135200-3136200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr7:3135200-3136400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr7:3135200-3136400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr7:3135200-3136400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:3135200-3136600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr7:3135200-3136800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr7:3135200-3136800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:3135200-3136800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:3135200-3137000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:3135400-3136400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:3135400-3136400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:3135400-3136600	Enhancers	Primary T cells from cord blood	blood
20	chr7:3135400-3136600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:3135400-3138200	Weak transcription	Fetal Thymus	thymus
22	chr7:3136000-3140800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:3136200-3137600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:3136200-3141000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr7:3136200-3141400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:3136400-3141400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:3136400-3141600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr7:3136400-3141800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:3136400-3145600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:3136600-3136800	Weak transcription	Primary T cells from cord blood	blood
31	chr7:3136600-3141400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:3136800-3137200	Enhancers	Primary T cells from cord blood	blood
33	chr7:3136800-3142000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr7:3136800-3142000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:3137000-3146000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr7:3137200-3141400	Weak transcription	Primary T cells from cord blood	blood

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