Variant report

Variant	nsv516620
Chromosome Location	chr6:80564519-80573282
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:80564754..80565348-chr6:80577673..80578339,2	MCF-7	breast:
2	chr6:80571013..80573087-chr6:80576802..80579710,2	K562	blood:
3	chr6:80501198..80501702-chr6:80568369..80569121,2	MCF-7	breast:
4	chr6:80569598..80572189-chr6:80581732..80584452,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ELOVL4-2	chr6:80570019-80570334	NONHSAT113715
2	lnc-ELOVL4-2	chr6:80572332-80572484	NONHSAT113715
3	lnc-TTK-5	chr6:80564401-80565349	NONHSAT113714

No data

Extended variants
information (count: 345 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:345 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9341799	chr6:80564519-80564520	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs140184567	chr6:80564536-80564537	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs560598357	chr6:80564544-80564545	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs577286572	chr6:80564554-80564555	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs368583963	chr6:80564555-80564556	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs546304113	chr6:80564581-80564582	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs562721850	chr6:80564582-80564583	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs531633055	chr6:80564591-80564592	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs550417368	chr6:80564594-80564595	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs150312154	chr6:80564633-80564634	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs137939456	chr6:80564647-80564648	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs371793969	chr6:80564786-80564787	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs546501665	chr6:80564795-80564796	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs566688312	chr6:80564798-80564799	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs1010937	chr6:80564822-80564823	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs538341375	chr6:80564835-80564836	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs346291	chr6:80564836-80564837	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
18	rs141335807	chr6:80564874-80564875	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs537843248	chr6:80564875-80564876	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs568466699	chr6:80564892-80564893	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs555261099	chr6:80564908-80564909	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs192861615	chr6:80564909-80564910	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs1010938	chr6:80564945-80564946	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs554048378	chr6:80564976-80564977	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs145118223	chr6:80565021-80565022	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs139007176	chr6:80565050-80565051	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs184016137	chr6:80565058-80565059	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs545968434	chr6:80565062-80565063	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs563043523	chr6:80565094-80565095	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs540792993	chr6:80565152-80565153	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs188698148	chr6:80565207-80565208	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs541838983	chr6:80565214-80565215	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs1407210	chr6:80565248-80565249	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs529917800	chr6:80565262-80565263	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs546909758	chr6:80565314-80565315	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs539283432	chr6:80565330-80565331	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs560081369	chr6:80565378-80565379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs180822003	chr6:80565380-80565381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs551938410	chr6:80565383-80565384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs149438542	chr6:80565480-80565481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs115844624	chr6:80565497-80565498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143655300	chr6:80565499-80565500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs116322963	chr6:80565544-80565545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533013978	chr6:80565585-80565586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs567338999	chr6:80565598-80565599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs148098038	chr6:80565601-80565602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs554487110	chr6:80565683-80565684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185177320	chr6:80565690-80565691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs141841305	chr6:80565755-80565756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs556350387	chr6:80565760-80565761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80558800-80570600	Weak transcription	Fetal Heart	heart
2	chr6:80564600-80564800	Enhancers	Esophagus	oesophagus
3	chr6:80564800-80573800	Weak transcription	Esophagus	oesophagus
4	chr6:80568800-80569000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:80570200-80571000	Enhancers	K562	blood
6	chr6:80570400-80571400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:80570600-80571400	Enhancers	Fetal Heart	heart
8	chr6:80570800-80571000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:80570800-80571200	Enhancers	Pancreas	Pancrea
10	chr6:80571000-80578200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:80571200-80572000	Weak transcription	Pancreas	Pancrea
12	chr6:80571400-80573200	Weak transcription	Fetal Heart	heart
13	chr6:80572000-80572200	Enhancers	Pancreas	Pancrea
14	chr6:80572000-80573000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:80572000-80573000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:80572200-80572800	Weak transcription	Pancreas	Pancrea
17	chr6:80572800-80573000	Enhancers	Pancreas	Pancrea
18	chr6:80573000-80573800	Weak transcription	Pancreas	Pancrea
19	chr6:80573200-80574800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:80573200-80576800	Enhancers	Fetal Heart	heart

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