Variant report

Variant	nsv516864
Chromosome Location	chr9:7941682-7945146
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:154 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12003195	chr9:7941682-7941683	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs140252179	chr9:7941698-7941699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs150379507	chr9:7941705-7941706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs138176295	chr9:7941723-7941724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549619875	chr9:7941758-7941759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547499951	chr9:7941799-7941800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs143020396	chr9:7941861-7941862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570854674	chr9:7941875-7941876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375001227	chr9:7941899-7941900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147463957	chr9:7941920-7941921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550290414	chr9:7941922-7941923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369479630	chr9:7941936-7941937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs568463688	chr9:7941941-7941942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368499288	chr9:7941946-7941947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554420302	chr9:7941969-7941970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138277699	chr9:7942015-7942016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186258703	chr9:7942040-7942041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs558163067	chr9:7942043-7942044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116527381	chr9:7942064-7942065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs543057557	chr9:7942072-7942073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs36071764	chr9:7942094-7942095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs149598769	chr9:7942108-7942109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs74830083	chr9:7942147-7942148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs540692618	chr9:7942155-7942156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs116388396	chr9:7942161-7942162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs144284025	chr9:7942238-7942239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190723572	chr9:7942239-7942240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561152635	chr9:7942244-7942245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs148771065	chr9:7942254-7942255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538197644	chr9:7942280-7942281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs567306216	chr9:7942290-7942291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530793500	chr9:7942322-7942323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs142382000	chr9:7942353-7942354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs568408130	chr9:7942356-7942357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs181771847	chr9:7942362-7942363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529928667	chr9:7942386-7942387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546475281	chr9:7942407-7942408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77028451	chr9:7942452-7942453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs372750592	chr9:7942453-7942454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs566321907	chr9:7942454-7942455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs540026290	chr9:7942464-7942465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs186853713	chr9:7942467-7942468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs558333369	chr9:7942493-7942494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146398164	chr9:7942509-7942510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs555086362	chr9:7942554-7942555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552109493	chr9:7942609-7942610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139774745	chr9:7942686-7942687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540756461	chr9:7942714-7942715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559022068	chr9:7942740-7942741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs199536788	chr9:7942744-7942745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	21811587	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7938400-7952000	Weak transcription	Aorta	Aorta
2	chr9:7944200-7945000	Enhancers	Dnd41	blood
3	chr9:7944400-7945000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:7944400-7948200	Enhancers	Fetal Heart	heart
5	chr9:7944600-7945200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:7945000-7946800	Weak transcription	Dnd41	blood

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